CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL18622
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0156223
T43725_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0182729
RRM
32
99
LFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0182729
RRM
315
385
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
aret
Drosophila melanogaster
FBgn0000114
D
0.964
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.816
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.816
AAEL000695
Aedes aegypti
AAEL000695
I
0.809
AGAP009477
Anopheles gambiae
AGAP009477
N
0.809
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.794
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.780
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.759
GE18585
Drosophila yakuba
FBgn0235992
N
0.752
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.723