CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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aret
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0000114
T42986_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret
M003_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00003
(Direct)
aret
M110_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00114
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M003_0.6
RRM
153
222
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
M003_0.6
RRM
240
307
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
M003_0.6
RRM
522
592
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
M110_0.6
RRM
16
85
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
M110_0.6
RRM
103
170
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
M110_0.6
RRM
385
455
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0079926
RRM
359
428
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
FBpp0079926
RRM
446
512
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIME
FBpp0079926
RRM
728
798
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0079927
RRM
153
222
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
FBpp0079927
RRM
240
307
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0079927
RRM
522
592
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0079928
RRM
153
222
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
FBpp0079928
RRM
240
307
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0079928
RRM
534
604
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0079929
RRM
1
64
MLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0079929
RRM
279
349
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0289794
RRM
153
222
MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMY
FBpp0289794
RRM
240
307
LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0289794
RRM
522
592
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD23828
Drosophila simulans
FBgn0195198
I
0.995
GG23776
Drosophila erecta
FBgn0115915
I
0.995
GE18580
Drosophila yakuba
FBgn0235987
I
0.995
GM26763
Drosophila sechellia
FBgn0181616
I
0.995
GK15493
Drosophila willistoni
FBgn0217498
I
0.990
GF14192
Drosophila ananassae
FBgn0091219
I
0.990
GJ17715
Drosophila virilis
FBgn0204884
I
0.976
GA25725-RB
Drosophila pseudoobscura
FBgn0247102
I
0.971
GH11642
Drosophila grimshawi
FBgn0119122
I
0.966
GL18622
Drosophila persimilis
FBgn0156223
N
0.964
GI17944
Drosophila mojavensis
FBgn0140684
I
0.962
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.787
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.787
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.781
AAEL000695
Aedes aegypti
AAEL000695
I
0.780
AGAP009477
Anopheles gambiae
AGAP009477
N
0.780
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.774
GE18585
Drosophila yakuba
FBgn0235992
N
0.774
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.773
GL18624
Drosophila persimilis
FBgn0156225
I
0.754
GH11645
Drosophila grimshawi
FBgn0119125
I
0.754
GK15495
Drosophila willistoni
FBgn0217500
I
0.754
GJ17718
Drosophila virilis
FBgn0204887
I
0.749
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.708