CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BDBG_03236
(
Blastomyces dermatitidis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
BDBG_03236
T17517_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BDBG_03236T0
KH
276
349
DAMKLELSMHTLVCGRTRKNIKFIEASTNTAIYFPPPFPRVFGYTPPGGSRRSEDEVYITGETQEQISLAKQKL
BDBG_03236T0
KH
456
492
TMLSDICTNSGAEVSFDKLTFTINGSDDSVKAAMMVI
BDBG_03236T0
KH
506
566
RVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGFNEYNFYIDVCGTQYDATRNGLDL
BDBG_03236T0
KH
574
643
SISFHVPDQYHKRIIGIGGQHIQRIMKKYSVFVKFSNAMDRGGVGKEDDDVKVDNVICRTPARNAQNLDL
BDBG_03236T0
KH
677
720
RMSEIEELEKKWNCKIDFPSTELASDFVTISGPEYQVPQAVDAF
Links
Other
KH
family RBPs
Other
Blastomyces dermatitidis
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE034058
Oryza indica
BGIOSIBCE034058
N
0.000
BGIOSIBCE036105
Oryza indica
BGIOSIBCE036105
N
0.000
BRADI4G20900
Brachypodium distachyon
BRADI4G20900
N
0.000
LOC_Os12g12360
Oryza sativa
LOC_Os12g12360
N
0.000
SB05G006890
Sorghum bicolor
Sb05g006890
N
0.000
SB08G007220
Sorghum bicolor
Sb08g007220
N
0.000
GRMZM2G072339
Zea mays
GRMZM2G072339
N
0.000
GRMZM2G171518
Zea mays
GRMZM2G171518
N
0.000