CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BDBG_03236
(
Blastomyces dermatitidis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
BDBG_03236
T17517_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BDBG_03236T0
KH
276
349
DAMKLELSMHTLVCGRTRKNIKFIEASTNTAIYFPPPFPRVFGYTPPGGSRRSEDEVYITGETQEQISLAKQKL
BDBG_03236T0
KH
456
492
TMLSDICTNSGAEVSFDKLTFTINGSDDSVKAAMMVI
BDBG_03236T0
KH
506
566
RVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGFNEYNFYIDVCGTQYDATRNGLDL
BDBG_03236T0
KH
574
643
SISFHVPDQYHKRIIGIGGQHIQRIMKKYSVFVKFSNAMDRGGVGKEDDDVKVDNVICRTPARNAQNLDL
BDBG_03236T0
KH
677
720
RMSEIEELEKKWNCKIDFPSTELASDFVTISGPEYQVPQAVDAF
Links
Other
KH
family RBPs
Other
Blastomyces dermatitidis
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.946
ACLA_074000
Aspergillus clavatus
CADACLAG00007261
N
0.879
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.855
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.855
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.832
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.824
TESG_05929
Trichophyton tonsurans
TESG_05929
N
0.805
TERG_04920
Trichophyton rubrum
TERG_04920
N
0.805
MGYG_03096
Microsporum gypseum
MGYG_03096
N
0.805
TEQG_01206
Trichophyton equinum
TEQG_01206
N
0.802
PABG_06460
Paracoccidioides brasiliensis
PABG_06460
N
0.788
MCYG_03492
Microsporum canis
MCYG_03492
N
0.785
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.752
estExt_Genewise1Plus.C_140444
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140444
N
0.705