CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MEX3B
(
Procavia capensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPCAG00000014150
T19322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000013170
KH
1
41
CKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREI
ENSPCAP00000013170
KH
76
135
TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI
Links
Other
KH
family RBPs
Other
Procavia capensis
RBPs
152 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM41
Homo sapiens
ENSG00000089682
D
0.000
RBM41
Bos taurus
ENSBTAG00000000955
I
0.000
RBM41
Monodelphis domestica
ENSMODG00000002312
I
0.000
Rbm41
Mus musculus
ENSMUSG00000031433
I
0.000
RBM41
Oryctolagus cuniculus
ENSOCUG00000015937
I
0.000
RBM41
Procavia capensis
ENSPCAG00000003991
I
0.000
ENSPPYG00000020609
Pongo pygmaeus
ENSPPYG00000020609
I
0.000
RBM41
Pan troglodytes
ENSPTRG00000022158
I
0.000
RBM41
Pteropus vampyrus
ENSPVAG00000001786
I
0.000
Rbm41
Rattus norvegicus
ENSRNOG00000012590
I
0.000
RBM41
Sorex araneus
ENSSARG00000004377
I
0.000
RBM41
Tarsius syrichta
ENSTSYG00000006980
I
0.000
RBM41
Vicugna pacos
ENSVPAG00000003647
I
0.000
RBM41
Macaca mulatta
ENSMMUG00000023172
I
0.000
RBM41
Microcebus murinus
ENSMICG00000009750
I
0.000
RBM41
Canis familiaris
ENSCAFG00000017959
I
0.000
LOC100405722
Callithrix jacchus
ENSCJAG00000007957
I
0.000
RBM41
Cavia porcellus
ENSCPOG00000025052
I
0.000
RBM41
Dasypus novemcinctus
ENSDNOG00000013865
I
0.000
Rbm41
Dipodomys ordii
ENSDORG00000008077
I
0.000
LOC100060588
Equus caballus
ENSECAG00000021846
I
0.000
RBM41
Erinaceus europaeus
ENSEEUG00000006722
I
0.000
RBM41
Echinops telfairi
ENSETEG00000019681
I
0.000
RBM41
Gorilla gorilla
ENSGGOG00000006587
I
0.000
RBM41
Loxodonta africana
ENSLAFG00000028266
I
0.000
Ame_R018426
Ailuropoda melanoleuca
Ame_R018426
I
0.000
RBM41
Macropus eugenii
ENSMEUG00000002663
N
0.000