CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM41
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000023172
T39006_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM41
M051_0.6
Homo sapiens
WUACWUK
RNAcompete
Ray et al.(2013)
RNCMPT00053
0.972
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000030499
RRM
311
381
LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLRGKILV
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100060588
Equus caballus
ENSECAG00000021846
I
0.986
RBM41
Pteropus vampyrus
ENSPVAG00000001786
I
0.972
RBM41
Dasypus novemcinctus
ENSDNOG00000013865
I
0.972
RBM41
Canis familiaris
ENSCAFG00000017959
I
0.972
RBM41
Pan troglodytes
ENSPTRG00000022158
I
0.972
ENSPPYG00000020609
Pongo pygmaeus
ENSPPYG00000020609
I
0.972
RBM41
Gorilla gorilla
ENSGGOG00000006587
I
0.972
RBM41
Homo sapiens
ENSG00000089682
D
0.972
RBM41
Vicugna pacos
ENSVPAG00000003647
I
0.972
RBM41
Loxodonta africana
ENSLAFG00000028266
I
0.958
RBM41
Bos taurus
ENSBTAG00000000955
I
0.958
RBM41
Sus scrofa
ENSSSCG00000012556
I
0.958
Ame_R018426
Ailuropoda melanoleuca
Ame_R018426
I
0.944
LOC100405722
Callithrix jacchus
ENSCJAG00000007957
I
0.944
RBM41
Procavia capensis
ENSPCAG00000003991
I
0.930
RBM41
Oryctolagus cuniculus
ENSOCUG00000015937
I
0.930
RBM41
Tarsius syrichta
ENSTSYG00000006980
I
0.930
RBM41
Sorex araneus
ENSSARG00000004377
I
0.930
RBM41
Echinops telfairi
ENSETEG00000019681
I
0.915
Rbm41
Mus musculus
ENSMUSG00000031433
I
0.901
RBM41
Erinaceus europaeus
ENSEEUG00000006722
I
0.901
RBM41
Cavia porcellus
ENSCPOG00000025052
I
0.887
RBM41
Microcebus murinus
ENSMICG00000009750
I
0.887
Rbm41
Rattus norvegicus
ENSRNOG00000012590
I
0.873
RBM41
Macropus eugenii
ENSMEUG00000002663
N
0.817
Rbm41
Dipodomys ordii
ENSDORG00000008077
I
0.817
RBM41
Monodelphis domestica
ENSMODG00000002312
I
0.817