CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD11380
(
Drosophila simulans
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0183129
T19961_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0209782
KH
116
161
GESKRICQQITKETGAQIEIVSGKNQSLTFLIKGKQSELLDARRKI
FBpp0209782
KH
170
230
SRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQGDESEFITIAGTKEGIAQAEQEI
FBpp0209782
KH
242
302
SDRITVPKVYHPFIVGPYSENLNKLQEETGARINVPPQQVQKDEIFISGEKDAVAAAKAKV
FBpp0209782
KH
315
375
TVSVEVAKPKHRYVIGPKGSTIAEILQLTGVSVEMPPNDSPSETITLRGPQVALGNALTVV
FBpp0209782
KH
382
440
VKSVEINAAHWIHKYVIGRKGANMKQLEEDCPNVNVNCLDDKIKLEGDPENVDRAVAYL
FBpp0209782
KH
453
512
FEVMTVNPSYYKHIIGKAGANVNRLKDELKVNINIEEREGQNNIRIEGPKEGVRQAQLEL
FBpp0209782
KH
524
585
SKDVIIDRRLHRSIIGAKGEKIREVKDRYRQVTITIPTPQENTDIVKLRGPKEDVDKCHKDL
FBpp0209782
KH
598
658
IIEVPIFKQFHKFVIGKGGANIKKIRDETQTKIDLPAEGDTNEVIVITGKKENVLEAKERI
FBpp0209782
KH
670
731
TEEVQIPPKYYNSIIGTGGKLISSIMEECGGVSIKFPNSDSKSDKVTIRGPKDDVEKAKVQL
FBpp0209782
KH
744
805
TAEVRAKQQHHKFLIGKNGASIRKIRDATGARIIFPSNEDTDKEVITIIGKEESVKKAREQL
FBpp0209782
KH
817
878
EGEVSVDPKHHKHFVAKRGFILHRISEECGGVMISFPRVGTNSDKVTIKGAKDCIEAARQRI
FBpp0209782
KH
890
988
TIEVVIPQRHHRTIMGARGFKVQQVTFEFDVQIKFPDRDATEPVEGLTNGGSGENGGENEGQEGEQEVEEKAKQEPVRQCDVIRITGRIEKCEAAKQAL
FBpp0209782
KH
995
1055
EVELSVPFDLHRTIIGPRGANVRQFMSKHDVHVELPHSELKSDVIKVCGTPARVAEAREAL
FBpp0209782
KH
1075
1136
VLHVDVDLEFRSKLIGRHGAVINKLRADHDVNISLPKRDEPNDRIISITGYQANAEAARDAI
FBpp0209782
KH
1148
1210
REVIEIDKRIHRHLIGPRRRTLRKIIEDNKVNIKFPDADDQTNPNSITISGKIEDVENVKELL
Links
Other
KH
family RBPs
Other
Drosophila simulans
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Dp1
Drosophila melanogaster
FBgn0027835
N
0.976
GK22993
Drosophila willistoni
FBgn0224955
N
0.894
GJ19895
Drosophila virilis
FBgn0207037
N
0.889
GM21884
Drosophila sechellia
FBgn0176761
N
0.985
GL17775
Drosophila persimilis
FBgn0155378
N
0.877
GI20125
Drosophila mojavensis
FBgn0142861
N
0.888
GH21672
Drosophila grimshawi
FBgn0129133
N
0.870
GG21892
Drosophila erecta
FBgn0114070
N
0.950
GF12176
Drosophila ananassae
FBgn0089215
N
0.907
GA18708-RA
Drosophila pseudoobscura
FBgn0078708
N
0.900
GE11968
Drosophila yakuba
FBgn0229746
N
0.950