CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE11968
(
Drosophila yakuba
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0229746
T20036_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0256978
KH
116
161
GESKRICQQITKETGAQIEIVSGKNQSLTFLIKGKQSELLDARRKI
FBpp0256978
KH
170
230
SRQVTVPREHFRVILGKGGQRLRELERVTATRINIPSQGDESEFITIAGTKEGIAQAEQEI
FBpp0256978
KH
242
302
SDRITVPKVYHPFIVGPYSENLNKLQEETGARINVPPQQVQKDEIIISGEKDAVAAAKAKV
FBpp0256978
KH
315
375
TVSVEVAKPKHRYVIGPKGSTIAEILQLTGVSVEMPPNDSPSETITLRGPQVALGNALTVV
FBpp0256978
KH
384
440
SVEINAPHWIHKYVIGRKGANMKQLEEDCPNVNVNCLEDKIKLEGDPENVDRAVAYL
FBpp0256978
KH
453
512
FEVMTVNPSFYKHIIGKAGANVNRLKDELKVNINIEEREGQNNIRIEGPKEGVRQAQLEL
FBpp0256978
KH
524
585
SKDVIIDRRLHRSIIGAKGEKIREVKDRYRQVTITIPTPQENTDIVKLRGPKEDVDKCHKDL
FBpp0256978
KH
598
658
IIEVPIFKQFHKFVIGKGGANIKKIRDETQTKIDLPAEGDTNEVIVITGKKENVLEAKERI
FBpp0256978
KH
670
731
TEEVQIPPKYYNSIIGTGGKLISSIMEECGGVSIKFPNSDSKSDKVTIRGPKDDVEKAKGQL
FBpp0256978
KH
744
805
TAEVRAKQQHHKFLIGKNGASIRKIRDATGARIIFPSNEDTDKEVITIIGKEDSVNKAREQL
FBpp0256978
KH
817
878
EGEVSVDPKHHKHFVAKRGFILHRISEECGGVMISFPRVGTNSDIVTIKGAKDCIEAARQRI
FBpp0256978
KH
890
987
TIEVVIPQRLHRTIMGARGFKVQQVTFEFDVQIKFPDRGATEPVEVLTNGGSGENGGEEGQEGEQQAEKEPEQEPVRQCDVIRITGRIEKCEAAKQAL
FBpp0256978
KH
994
1054
EEELTVPFDLHRTIIGPRGANVRQFMSKHDVHVELPPSELKSDVIKVCGTPARVAEAREAL
FBpp0256978
KH
1074
1135
VLQVDVDTEFHSKLIGRHGAVINKLRADHDVNISLPKRDEPNDSIISITGYQANCEAARDAI
FBpp0256978
KH
1147
1207
REVIEIDKRIHPHIIGQRRRNIRKIMEDYEVNIKFPGADQQINSVTIIGHPDDVENVKELL
Links
Other
KH
family RBPs
Other
Drosophila yakuba
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG21892
Drosophila erecta
FBgn0114070
N
0.969
Dp1
Drosophila melanogaster
FBgn0027835
N
0.954
GD11380
Drosophila simulans
FBgn0183129
N
0.950
GM21884
Drosophila sechellia
FBgn0176761
N
0.942
GF12176
Drosophila ananassae
FBgn0089215
N
0.908
GA18708-RA
Drosophila pseudoobscura
FBgn0078708
N
0.902
GK22993
Drosophila willistoni
FBgn0224955
N
0.893
GJ19895
Drosophila virilis
FBgn0207037
N
0.892
GI20125
Drosophila mojavensis
FBgn0142861
N
0.891
GL17775
Drosophila persimilis
FBgn0155378
N
0.878
GH21672
Drosophila grimshawi
FBgn0129133
N
0.875