CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
BICC1
(
Sus scrofa
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSSSCG00000010204
T22513_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000010880
KH
70
122
GKSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSSSCP00000010880
KH
134
199
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSSSCP00000010880
KH
226
267
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSALKEG
ENSSSCP00000010880
KH
286
348
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSSSCP00000010880
SAM
874
934
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Sus scrofa
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm4222
Apis mellifera
amel4_ncbi_hmm4222
I
0.000
nasonia_NCBI_hmm460384
Nasonia vitripennis
nasonia_NCBI_hmm460384
I
0.000
PHUM305930
Pediculus humanus
PHUM305930
I
0.000
CpipJ_CPIJ007352
Culex pipiens
CpipJ_CPIJ007352
N
0.000
GM14053
Drosophila sechellia
FBgn0168982
N
0.000
GD13329
Drosophila simulans
FBgn0185047
N
0.000
GJ13107
Drosophila virilis
FBgn0200334
N
0.000
GK20378
Drosophila willistoni
FBgn0222375
N
0.000
GA28277-RA
Drosophila pseudoobscura
FBgn0249640
N
0.000
GI12962
Drosophila mojavensis
FBgn0135719
N
0.000
GH24419
Drosophila grimshawi
FBgn0131875
N
0.000
GH15361
Drosophila grimshawi
FBgn0122833
N
0.000
GG14260
Drosophila erecta
FBgn0106521
N
0.000
GF10271
Drosophila ananassae
FBgn0087312
N
0.000
YT521-B
Drosophila melanogaster
FBgn0027616
N
0.000
CPIJ007352
Culex quinquefasciatus
CPIJ007352
N
0.000
AGAP005940
Anopheles gambiae
AGAP005940
N
0.000
AAEL002272
Aedes aegypti
AAEL002272
N
0.000
BGIBMGA011690
Bombyx mori
BGIBMGA011690
N
0.000