LOC100415491 (Callithrix jacchus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSCJAG00000006035 T24169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.989
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.989
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.905
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.905
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.905
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.905
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.905
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000011250 PUF 585 619
ENSCJAP00000011250 PUF 621 653
ENSCJAP00000011250 PUF 657 689
ENSCJAP00000011250 PUF 695 729
ENSCJAP00000011250 PUF 731 765
ENSCJAP00000011250 PUF 767 801
ENSCJAP00000011250 PUF 803 833
ENSCJAP00000011250 PUF 849 880
ENSCJAP00000011275 PUF 704 738
ENSCJAP00000011275 PUF 740 772
ENSCJAP00000011275 PUF 776 807
ENSCJAP00000011275 PUF 814 848
ENSCJAP00000011275 PUF 850 884
ENSCJAP00000011275 PUF 886 920
ENSCJAP00000011275 PUF 922 952
ENSCJAP00000011275 PUF 968 999
ENSCJAP00000011316 PUF 848 882
ENSCJAP00000011316 PUF 884 916
ENSCJAP00000011316 PUF 920 951
ENSCJAP00000011316 PUF 958 992
ENSCJAP00000011316 PUF 994 1028
ENSCJAP00000011316 PUF 1030 1064
ENSCJAP00000011316 PUF 1066 1096
ENSCJAP00000011316 PUF 1112 1143
ENSCJAP00000011345 PUF 884 918
ENSCJAP00000011345 PUF 920 952
ENSCJAP00000011345 PUF 956 987
ENSCJAP00000011345 PUF 994 1028
ENSCJAP00000011345 PUF 1030 1064
ENSCJAP00000011345 PUF 1066 1100
ENSCJAP00000011345 PUF 1102 1132
ENSCJAP00000011345 PUF 1148 1179

Links

Other PUF family RBPs
Other Callithrix jacchus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.000
PMAA_025390 Penicillium marneffei PMAA_025390 N 0.000
GP3.065690 Batrachochytrium dendrobatidis GP3.065690 N 0.000
fgenesh1_pm.C_scaffold_6000038 Sporobolomyces roseus fgenesh1_pm.C_scaffold_6000038 N 0.000
estExt_Genewise1Plus.C_chr_120039 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_120039 N 0.000
estExt_Genewise1.C_11041 Mucor circinelloides estExt_Genewise1.C_11041 N 0.000
estExt_Genewise1.C_100240 Cochliobolus heterostrophus C5 estExt_Genewise1.C_100240 N 0.000
estExt_fgenesh3_kg.C_60298 Neurospora discreta estExt_fgenesh3_kg.C_60298 N 0.000
estExt_fgenesh2_kg.C_50198 Thielavia terrestris estExt_fgenesh2_kg.C_50198 N 0.000
estExt_fgenesh1_pm.C_10632 Trichoderma atroviride estExt_fgenesh1_pm.C_10632 N 0.000
estExt_fgenesh1_pm.C_10518 Schizophyllum commune estExt_fgenesh1_pm.C_10518 N 0.000
estExt_fgenesh1_kg.C_50066 Myceliophthora thermophila estExt_fgenesh1_kg.C_50066 N 0.000
e_gw1.5.977.1 Nectria haematococca e_gw1.5.977.1 N 0.000
e_gw1.4.511.1 Trichoderma reesei e_gw1.4.511.1 N 0.000
NCU03946 Neurospora crassa NCU03946 N 0.000
gw1.7.208.1 Melampsora laricis populina gw1.7.208.1 N 0.000
gw1.9.853.1 Trichoderma virens gw1.9.853.1 N 0.000
Pc16g02770 Penicillium chrysogenum Pc16g02770 N 0.000
Pa_4_2600 Podospora anserina Pa_4_2600 N 0.000
GSTUMT00011743001 Tuber melanosporum GSTUMT00011743001 N 0.000
fgenesh1_pm.00083_#_765 Aspergillus carbonarius fgenesh1_pm.00083_#_765 N 0.000
estExt_Genewise1Plus.C_40474 Tremella mesenterica estExt_Genewise1Plus.C_40474 N 0.000
estExt_fgenesh2_pm.C_40328 Serpula lacrymans estExt_fgenesh2_pm.C_40328 N 0.000
e_gw1.7.1421.1 Cryphonectria parasitica e_gw1.7.1421.1 N 0.000
e_gw1.4.2157.1 Pleurotus ostreatus e_gw1.4.2157.1 N 0.000
e_gw1.4.1867.1 Agaricus bisporus e_gw1.4.1867.1 N 0.000
EDP44971.1 Malassezia globosa EDP44971.1 N 0.000
AB03725.1 Alternaria brassicicola AB03725.1 N 0.000
EAT87520.1 Phaeosphaeria nodorum EAT87520.1 N 0.000
gww1.2.642.1 Laccaria bicolor gww1.2.642.1 N 0.000
NFIA_016120 Neosartorya fischeri CADNFIAG00000670 N 0.000
AO090012000924 Aspergillus oryzae CADAORAG00006445 N 0.000
MGYG_08646 Microsporum gypseum MGYG_08646 N 0.000
MGG_07252 Magnaporthe oryzae MGG_07252 N 0.000
MCYG_08495 Microsporum canis MCYG_08495 N 0.000
GLRG_10164 Colletotrichum graminicola GLRG_10164 N 0.000
FVEG_02944 Fusarium verticillioides FVEG_02944 N 0.000
FOXG_05189 Fusarium oxysporum FOXG_05189 N 0.000
FGSG_10271 Fusarium graminearum FGSG_10271 N 0.000
CPSG_01188 Coccidioides posadasii CPSG_01188 N 0.000
CNBG_5499 Cryptococcus neoformans CNBG_5499 N 0.000
CIMG_07119 Coccidioides immitis CIMG_07119 N 0.000
CHGG_08656 Chaetomium globosum CHGG_08656 N 0.000
CC1G_14585 Coprinopsis cinerea CC1G_14585 N 0.000
BDBG_02376 Blastomyces dermatitidis BDBG_02376 N 0.000
PABG_00587 Paracoccidioides brasiliensis PABG_00587 N 0.000
PTRG_03828 Pyrenophora tritici repentis PTRG_03828 N 0.000
RO3G_09831 Rhizopus oryzae RO3G_09831 N 0.000
ANIA_01340 Aspergillus nidulans CADANIAG00001272 N 0.000
An08g01040 Aspergillus niger CADANGAG00006423 N 0.000
AFUA_1G09490 Aspergillus fumigatus CADAFUAG00007045 N 0.000
ACLA_026010 Aspergillus clavatus CADACLAG00002760 N 0.000
VDBG_00465 Verticillium albo atrum VDBG_00465 N 0.000
VDAG_00074 Verticillium dahliae VDAG_00074 N 0.000
UREG_05781 Uncinocarpus reesii UREG_05781 N 0.000
UM02401 Ustilago maydis UM02401 N 0.000
TESG_01534 Trichophyton tonsurans TESG_01534 N 0.000
TERG_02884 Trichophyton rubrum TERG_02884 N 0.000
SS1G_03706 Sclerotinia sclerotiorum SS1G_03706 N 0.000
SPPG_00782 Spizellomyces punctatus SPPG_00782 N 0.000
SNOG_05129 Stagonospora nodorum SNOG_05129 N 0.000
BC1G_07056 Botrytis cinerea BC1G_07056 N 0.000