LOC100415491 (Callithrix jacchus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSCJAG00000006035 T24169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.989
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.989
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.905
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.905
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.905
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.905
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.905
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000011250 PUF 585 619
ENSCJAP00000011250 PUF 621 653
ENSCJAP00000011250 PUF 657 689
ENSCJAP00000011250 PUF 695 729
ENSCJAP00000011250 PUF 731 765
ENSCJAP00000011250 PUF 767 801
ENSCJAP00000011250 PUF 803 833
ENSCJAP00000011250 PUF 849 880
ENSCJAP00000011275 PUF 704 738
ENSCJAP00000011275 PUF 740 772
ENSCJAP00000011275 PUF 776 807
ENSCJAP00000011275 PUF 814 848
ENSCJAP00000011275 PUF 850 884
ENSCJAP00000011275 PUF 886 920
ENSCJAP00000011275 PUF 922 952
ENSCJAP00000011275 PUF 968 999
ENSCJAP00000011316 PUF 848 882
ENSCJAP00000011316 PUF 884 916
ENSCJAP00000011316 PUF 920 951
ENSCJAP00000011316 PUF 958 992
ENSCJAP00000011316 PUF 994 1028
ENSCJAP00000011316 PUF 1030 1064
ENSCJAP00000011316 PUF 1066 1096
ENSCJAP00000011316 PUF 1112 1143
ENSCJAP00000011345 PUF 884 918
ENSCJAP00000011345 PUF 920 952
ENSCJAP00000011345 PUF 956 987
ENSCJAP00000011345 PUF 994 1028
ENSCJAP00000011345 PUF 1030 1064
ENSCJAP00000011345 PUF 1066 1100
ENSCJAP00000011345 PUF 1102 1132
ENSCJAP00000011345 PUF 1148 1179

Links

Other PUF family RBPs
Other Callithrix jacchus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZCCHC14 Anolis carolinensis ENSACAG00000014623 N 0.000
ZCCHC14 Monodelphis domestica ENSMODG00000004488 N 0.000
Zcchc14 Mus musculus ENSMUSG00000061410 N 0.000
ENSOANG00000003350 Ornithorhynchus anatinus ENSOANG00000003350 N 0.000
ZCCHC14 Oryctolagus cuniculus ENSOCUG00000009286 N 0.000
ZCCHC14 Otolemur garnettii ENSOGAG00000004257 N 0.000
ZCCHC14 Ochotona princeps ENSOPRG00000008429 N 0.000
ZCCHC14 Procavia capensis ENSPCAG00000013438 N 0.000
ZCCHC14 Pan troglodytes ENSPTRG00000008446 N 0.000
Zcchc14 Rattus norvegicus ENSRNOG00000018226 N 0.000
ZCCHC14 Sorex araneus ENSSARG00000011864 N 0.000
ZCCHC14 Sus scrofa ENSSSCG00000002656 N 0.000
ZCCHC14 Spermophilus tridecemlineatus ENSSTOG00000006167 N 0.000
ZCCHC14 Tupaia belangeri ENSTBEG00000001210 N 0.000
ZCCHC14 Taeniopygia guttata ENSTGUG00000007612 N 0.000
ZCCHC14 Tursiops truncatus ENSTTRG00000008840 N 0.000
ZCCHC14 Macaca mulatta ENSMMUG00000017615 N 0.000
ZCCHC14 Myotis lucifugus ENSMLUG00000015605 N 0.000
ZCCHC14 Microcebus murinus ENSMICG00000007362 N 0.000
ZCCHC14 Bos taurus ENSBTAG00000014267 N 0.000
ZCCHC14 Canis familiaris ENSCAFG00000019907 N 0.000
ZCCHC14 Choloepus hoffmanni ENSCHOG00000012076 N 0.000
ZCCHC14 Callithrix jacchus ENSCJAG00000004460 N 0.000
ZCCHC14 Cavia porcellus ENSCPOG00000007705 N 0.000
ZCCHC14 Danio rerio ENSDARG00000012738 N 0.000
Zcchc14 Dipodomys ordii ENSDORG00000013867 N 0.000
LOC100070592 Equus caballus ENSECAG00000013066 N 0.000
ZCCHC14 Erinaceus europaeus ENSEEUG00000011890 N 0.000
ZCCHC14 Homo sapiens ENSG00000140948 N 0.000
ZCCHC14 Gasterosteus aculeatus ENSGACG00000003190 N 0.000
ZCCHC14 Gallus gallus ENSGALG00000005771 N 0.000
ZCCHC14 Gorilla gorilla ENSGGOG00000026113 N 0.000
ZCCHC14 Loxodonta africana ENSLAFG00000013845 N 0.000
ZCCHC14 Meleagris gallopavo ENSMGAG00000007316 N 0.000
Ame_R001151 Ailuropoda melanoleuca Ame_R001151 N 0.000