PUM1 (Erinaceus europaeus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSEEUG00000003871 T24190_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.982
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.982
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.897
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.897
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.897
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.897
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.897
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.781
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.781
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.781
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.781
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.781
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.781
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000003551 PUF 881 915
ENSEEUP00000003551 PUF 917 949
ENSEEUP00000003551 PUF 953 984
ENSEEUP00000003551 PUF 991 1025
ENSEEUP00000003551 PUF 1027 1061
ENSEEUP00000003551 PUF 1063 1097
ENSEEUP00000003551 PUF 1099 1129
ENSEEUP00000003551 PUF 1145 1176

Links

Other PUF family RBPs
Other Erinaceus europaeus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_13853 Botrytis cinerea BC1G_13853 N 0.000
AO090010000458 Aspergillus oryzae CADAORAG00004519 N 0.000
ATEG_07640 Aspergillus terreus CADATEAG00000474 N 0.000
NFIA_076400 Neosartorya fischeri CADNFIAG00008573 N 0.000
NCU06318 Neurospora crassa NCU06318 N 0.000
estExt_fgenesh1_pg.C_40021 Neurospora tetrasperma estExt_fgenesh1_pg.C_40021 N 0.000
estExt_fgenesh2_pg.C_30399 Neurospora discreta estExt_fgenesh2_pg.C_30399 N 0.000
estExt_fgenesh1_pg.C_30380 Cryphonectria parasitica estExt_fgenesh1_pg.C_30380 N 0.000
Pa_6_9920 Podospora anserina Pa_6_9920 N 0.000
ANIA_04721 Aspergillus nidulans CADANIAG00005708 N 0.000
AFUA_5G10830 Aspergillus fumigatus CADAFUAG00006235 N 0.000
CPSG_07949 Coccidioides posadasii CPSG_07949 N 0.000
GLRG_07196 Colletotrichum graminicola GLRG_07196 N 0.000
HCAG_00961 Histoplasma capsulatum HCAG_00961 N 0.000
MGG_08807 Magnaporthe oryzae MGG_08807 N 0.000
PABG_04784 Paracoccidioides brasiliensis PABG_04784 N 0.000
SS1G_13866 Sclerotinia sclerotiorum SS1G_13866 N 0.000
ACLA_013700 Aspergillus clavatus CADACLAG00000914 N 0.000
AFLA_119410 Aspergillus flavus CADAFLAG00012513 N 0.000
Pc21g10420 Penicillium chrysogenum Pc21g10420 N 0.000