CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_05989
(
Coccidioides immitis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CIMG_05989
T28675_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_05989T0
RRM
193
258
LYVGRIHVTDDIEEVVARHFSEWGQIDRIRVLNNRGVAFVTYSNEANSQFAKEAMAHQSLDHNEIL
Links
Other
RRM
family RBPs
Other
Coccidioides immitis
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ009773
Culex pipiens
CpipJ_CPIJ009773
N
0.000
estExt_Genewise1Plus.C_1030025
Daphnia pulex
estExt_Genewise1Plus.C_1030025
N
0.000
PHUM433160
Pediculus humanus
PHUM433160
N
0.000
GK17961
Drosophila willistoni
FBgn0219960
N
0.000
GJ21539
Drosophila virilis
FBgn0208659
N
0.000
GL11864
Drosophila persimilis
FBgn0149472
N
0.000
GI18454
Drosophila mojavensis
FBgn0141193
N
0.000
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.000
CPIJ009773
Culex quinquefasciatus
CPIJ009773
N
0.000
AGAP011722
Anopheles gambiae
AGAP011722
N
0.000
AAEL011420
Aedes aegypti
AAEL011420
N
0.000
nasonia_NCBI_hmm386924
Nasonia vitripennis
nasonia_NCBI_hmm386924
N
0.000
DGIL_AUG5s15238g5t4
Acyrtosiphon pisum
DGIL_AUG5s15238g5t4
N
0.000
BGIBMGA004353
Bombyx mori
BGIBMGA004353
N
0.000