CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s15238g5t4
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s15238g5t4
T32022_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s15238g5t4
RRM
282
351
VRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAHGRRNGEAVVRFVNQEHRDMAMKRHKHHIGSRYIE
DGIL_AUG5s15238g5t4
RRM
383
458
VRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDAPKALSKHRDLIGTRYIE
DGIL_AUG5s15238g5t4
RRM
481
554
IRLRGLPYEANVEHILEFLGEHSKNIVFQGVHMVYNSVGHASGEAFIQMNNEGSAAQAAMAKHHNYMSFGKKQR
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm386924
Nasonia vitripennis
nasonia_NCBI_hmm386924
N
0.786
PHUM433160
Pediculus humanus
PHUM433160
N
0.783
BGIBMGA004353
Bombyx mori
BGIBMGA004353
N
0.768
AAEL011420
Aedes aegypti
AAEL011420
N
0.768
estExt_Genewise1Plus.C_1030025
Daphnia pulex
estExt_Genewise1Plus.C_1030025
N
0.761
AGAP011722
Anopheles gambiae
AGAP011722
N
0.755
GK17961
Drosophila willistoni
FBgn0219960
N
0.750
GL11864
Drosophila persimilis
FBgn0149472
N
0.750
GI18454
Drosophila mojavensis
FBgn0141193
N
0.750
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.750
GH22967
Drosophila grimshawi
FBgn0130424
N
0.745
GJ21539
Drosophila virilis
FBgn0208659
N
0.745
amel4_ncbi_hmm14071
Apis mellifera
amel4_ncbi_hmm14071
N
0.709