CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM433160
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM433160
T45364_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM433160-PA
RRM
196
265
VRARGLPWQSSDGDIARFFRGLNIEKGGVALCLSPAGRRNGEALVRFVNQAHRDMALKRHKHHMGQRYIE
PHUM433160-PA
RRM
297
373
IRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNESDAPKALSKHRERIGSRYIE
PHUM433160-PA
RRM
427
500
IRLRGLPYEAQVEHILDFLGDYAKNIVFQGVHMVYNSHGQPSGEAFIQMDSEASAFHAANHRHHQYMIFGKKQR
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL011420
Aedes aegypti
AAEL011420
N
0.801
GL11864
Drosophila persimilis
FBgn0149472
N
0.783
DGIL_AUG5s15238g5t4
Acyrtosiphon pisum
DGIL_AUG5s15238g5t4
N
0.783
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.783
GI18454
Drosophila mojavensis
FBgn0141193
N
0.783
nasonia_NCBI_hmm386924
Nasonia vitripennis
nasonia_NCBI_hmm386924
N
0.778
estExt_Genewise1Plus.C_1030025
Daphnia pulex
estExt_Genewise1Plus.C_1030025
N
0.775
GJ21539
Drosophila virilis
FBgn0208659
N
0.774
BGIBMGA004353
Bombyx mori
BGIBMGA004353
N
0.774
GK17961
Drosophila willistoni
FBgn0219960
N
0.769
AGAP011722
Anopheles gambiae
AGAP011722
N
0.769
GH22967
Drosophila grimshawi
FBgn0130424
N
0.769
amel4_ncbi_hmm14071
Apis mellifera
amel4_ncbi_hmm14071
N
0.706