CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DRT111
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT1G30480-TAIR-G
T32648_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G30480.1-P
RRM
301
363
EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVR
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRNP70
Homo sapiens
ENSG00000104852
D
0.000
SNRNP70
Anolis carolinensis
ENSACAG00000013276
I
0.000
SNRNP70
Macaca mulatta
ENSMMUG00000004928
I
0.000
Snrnp70
Mus musculus
ENSMUSG00000063511
I
0.000
SNRNP70
Ornithorhynchus anatinus
ENSOANG00000005213
I
0.000
SNRNP70
Oryctolagus cuniculus
ENSOCUG00000015081
I
0.000
ENSPPYG00000010234
Pongo pygmaeus
ENSPPYG00000010234
I
0.000
SNRNP70
Pan troglodytes
ENSPTRG00000011277
I
0.000
Snrnp70
Rattus norvegicus
ENSRNOG00000020763
I
0.000
SNRNP70
Spermophilus tridecemlineatus
ENSSTOG00000013988
I
0.000
SNRNP70
Takifugu rubripes
ENSTRUG00000009202
I
0.000
SNRNP70
Tursiops truncatus
ENSTTRG00000017099
I
0.000
snrnp70
Xenopus tropicalis
ENSXETG00000022919
I
0.000
SNRNP70
Myotis lucifugus
ENSMLUG00000011766
I
0.000
SNRNP70
Loxodonta africana
ENSLAFG00000028536
I
0.000
RU17_BOVIN
Bos taurus
ENSBTAG00000001996
I
0.000
SNRNP70
Canis familiaris
ENSCAFG00000003711
I
0.000
LOC100392779
Callithrix jacchus
ENSCJAG00000000193
I
0.000
SNRNP70
Cavia porcellus
ENSCPOG00000019589
I
0.000
snrnp70
Danio rerio
ENSDARG00000077126
I
0.000
Snrnp70
Dipodomys ordii
ENSDORG00000010228
I
0.000
LOC100054907
Equus caballus
ENSECAG00000013936
I
0.000
SNRNP70
Erinaceus europaeus
ENSEEUG00000005666
I
0.000
SNRNP70
Felis catus
ENSFCAG00000006683
I
0.000
SNRNP70
Gasterosteus aculeatus
ENSGACG00000000448
I
0.000
SNRNP70
Gorilla gorilla
ENSGGOG00000008245
I
0.000
Ame_R005855
Ailuropoda melanoleuca
Ame_R005855
I
0.000