Ncl (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000012513 T36518_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000011765 RRM 312 380
ENSDORP00000011765 RRM 398 463
ENSDORP00000011765 RRM 489 555
ENSDORP00000011765 RRM 575 642

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK28309.1 Cannabis sativa PK28309.1 N 0.000
GSVIVG00020933001 Vitis vinifera GSVIVG00020933001 N 0.000
B9I5U9_POPTR Populus trichocarpa POPTR_0013s05120 N 0.000
29950.m001170 Ricinus communis 29950.m001170 N 0.000
cassava35697.valid.m1 Manihot esculenta cassava35697.valid.m1 N 0.000
Medtr7g100170 Medicago truncatula Medtr7g100170 N 0.000
ppa005530m Prunus persica ppa005530m N 0.000