CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Ncl
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000012513
T36518_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.863
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000011765
RRM
312
380
LFIGNLNPNKSVPDLKAAISELFAKNDLTVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIK
ENSDORP00000011765
RRM
398
463
LLAKNLSFNVTQDDLKEVFENAMEIRVVSHDGKSKGIAYIEFKTEADAEKAFEEKQGAEVDGRNIA
ENSDORP00000011765
RRM
489
555
LVLSNLSYSATEETLQEVFEKATFIKVPQNPNGKPKGYAFIEFASFEDAKEALNSCNKREIEGRAIR
ENSDORP00000011765
RRM
575
642
LFVKGLSEETTEETLKESFEGSIRARIVTDRETGSSKGFGFVDFYSEEAAKEVMDAMEDCEIDGNKVT
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK28309.1
Cannabis sativa
PK28309.1
N
0.000
GSVIVG00020933001
Vitis vinifera
GSVIVG00020933001
N
0.000
B9I5U9_POPTR
Populus trichocarpa
POPTR_0013s05120
N
0.000
29950.m001170
Ricinus communis
29950.m001170
N
0.000
cassava35697.valid.m1
Manihot esculenta
cassava35697.valid.m1
N
0.000
Medtr7g100170
Medicago truncatula
Medtr7g100170
N
0.000
ppa005530m
Prunus persica
ppa005530m
N
0.000