Ncl (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000012513 T36518_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000011765 RRM 312 380
ENSDORP00000011765 RRM 398 463
ENSDORP00000011765 RRM 489 555
ENSDORP00000011765 RRM 575 642

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI28969 Xenopus laevis AAI28969 N 0.000
GF11824 Drosophila ananassae FBgn0088864 N 0.000
GG20814 Drosophila erecta FBgn0113000 N 0.000
GH18755 Drosophila grimshawi FBgn0126222 N 0.000
GI22645 Drosophila mojavensis FBgn0145373 N 0.000
GL12210 Drosophila persimilis FBgn0149817 N 0.000
GM25797 Drosophila sechellia FBgn0180653 N 0.000
GD20374 Drosophila simulans FBgn0191847 N 0.000
GJ23373 Drosophila virilis FBgn0210474 N 0.000
GA16051-RA Drosophila pseudoobscura FBgn0076067 N 0.000
Rpb7 Drosophila melanogaster FBgn0051155 N 0.000
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.000
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.000
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.000
POLR2G Spermophilus tridecemlineatus ENSSTOG00000004391 N 0.000
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.000
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.000
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.000
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.000
GK11212 Drosophila willistoni FBgn0213223 N 0.000
GE26402 Drosophila yakuba FBgn0243428 N 0.000
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.000
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.000
Minc17095 Meloidogyne incognita Minc17095 N 0.000
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.000
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.000
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.000
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.000
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.000
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.000
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.000
GA27654-RA Drosophila pseudoobscura FBgn0249019 N 0.000
PHUM079870 Pediculus humanus PHUM079870 N 0.000
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.000
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.000
Aqu1.223919 Amphimedon queenslandica Aqu1.223919 N 0.000
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.000
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.000
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.000
POLR2G Procavia capensis ENSPCAG00000016408 N 0.000
POLR2G Oryzias latipes ENSORLG00000003154 N 0.000
CPIJ001219 Culex quinquefasciatus CPIJ001219 N 0.000
CRE30052 Caenorhabditis remanei CRE30052 N 0.000
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.000
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.000
POLR2G Canis familiaris ENSCAFG00000015461 N 0.000
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.000
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.000
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.000
CJA18930 Caenorhabditis japonica CJA18930 N 0.000
CBN18093 Caenorhabditis brenneri CBN18093 N 0.000
CpipJ_CPIJ001219 Culex pipiens CpipJ_CPIJ001219 N 0.000
LOAG_03448 Loa loa LOAG_03448 N 0.000
amel4_ncbi_hmm13760 Apis mellifera amel4_ncbi_hmm13760 N 0.000
amel4_ncbi_hmm13760 Tribolium castaneum amel4_ncbi_hmm13760 N 0.000
DGIL_AUG5s10638g4t1 Acyrtosiphon pisum DGIL_AUG5s10638g4t1 N 0.000
nasonia_NCBI_hmm304924 Nasonia vitripennis nasonia_NCBI_hmm304924 N 0.000
AAEL003401 Aedes aegypti AAEL003401 N 0.000
CBG04195 Caenorhabditis briggsae CBG04195 N 0.000
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.000
polr2gl Danio rerio ENSDARG00000056127 N 0.000
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.000
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.000
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.000
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.000
Polr2g Mus musculus ENSMUSG00000071662 N 0.000
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.000
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.000
POLR2G Ochotona princeps ENSOPRG00000014769 N 0.000
POLR2G Microcebus murinus ENSMICG00000009967 N 0.000
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.000
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.000
LOC100063883 Equus caballus ENSECAG00000021465 N 0.000
ENSEEUG00000007416 Erinaceus europaeus ENSEEUG00000007416 N 0.000
POLR2G Echinops telfairi ENSETEG00000019637 N 0.000
POLR2G Homo sapiens ENSG00000168002 N 0.000
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.000
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.000
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.000
Bm1_48540 Brugia malayi Bm1_48540 N 0.000