Ncl (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000012513 T36518_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000011765 RRM 312 380
ENSDORP00000011765 RRM 398 463
ENSDORP00000011765 RRM 489 555
ENSDORP00000011765 RRM 575 642

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ncl Mus musculus ENSMUSG00000026234 I 0.885
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.878
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.867
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.867
NCL Canis familiaris ENSCAFG00000011037 I 0.863
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.863
NCL Macaca mulatta ENSMMUG00000018094 I 0.863
NCL Bos taurus ENSBTAG00000016174 I 0.863
NCL Pan troglodytes ENSPTRG00000013025 I 0.863
NCL Homo sapiens ENSG00000115053 D 0.863
NCL Gorilla gorilla ENSGGOG00000004300 I 0.863
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.859
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.859
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.852
NCL Tursiops truncatus ENSTTRG00000009094 I 0.852
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.852
NCL Tarsius syrichta ENSTSYG00000004355 I 0.848
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.837
NCL Microcebus murinus ENSMICG00000002538 I 0.837
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.837
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.819
NCL Cavia porcellus ENSCPOG00000001034 I 0.796
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.770
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.767
NCL Vicugna pacos ENSVPAG00000001796 I 0.748
NCL Monodelphis domestica ENSMODG00000002470 I 0.742
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.738
NCL Macropus eugenii ENSMEUG00000012335 I 0.738
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.730
NCL Loxodonta africana ENSLAFG00000013061 I 0.726
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.711