cassava35697.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava35697.valid.m1 T49326_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35697.valid.m1 RRM 16 82
cassava35697.valid.m1 RRM 367 441

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29950.m001170 Ricinus communis 29950.m001170 N 0.915
GSVIVG00020933001 Vitis vinifera GSVIVG00020933001 N 0.859
ppa005530m Prunus persica ppa005530m N 0.832
B9I5U9_POPTR Populus trichocarpa POPTR_0013s05120 N 0.831
Glyma16g04710.1 Glycine max Glyma16g04710.1 N 0.789
XM_002892448.1 Arabidopsis lyrata fgenesh2_kg.1__966__AT1G09230.1 N 0.761
POPTR_0019s04720 Populus trichocarpa POPTR_0019s04720 N 0.746
BRADI2G18227 Brachypodium distachyon BRADI2G18227 N 0.739
AT1G09230 Arabidopsis thaliana AT1G09230-TAIR-G N 0.739
LOC_Os03g21020 Oryza sativa LOC_Os03g21020 N 0.732
Medtr7g100170 Medicago truncatula Medtr7g100170 N 0.725
GRMZM2G042615 Zea mays GRMZM2G042615 N 0.725
SB01G036600 Sorghum bicolor Sb01g036600 N 0.718
PK28309.1 Cannabis sativa PK28309.1 N 0.713