CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP1
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000104413
T37209_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.731
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000316145
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000316145
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000316145
RRM
447
519
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
ENSP00000351168
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000351168
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000351168
RRM
447
519
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
ENSP00000382209
RRM
66
135
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000382209
RRM
167
239
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000382209
RRM
286
314
IRLRGLPYAATIEDILDFLGEFATDIRTH
ENSP00000402766
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000402766
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000402766
RRM
447
519
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
ENSP00000405738
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000405738
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000405738
RRM
447
519
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
ENSP00000407349
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSP00000407349
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSP00000407349
RRM
447
519
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ESRP2
Homo sapiens
ENSG00000103067
D
0.731
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.931
ENSPPYG00000007484
Pongo pygmaeus
ENSPPYG00000007484
I
0.727
ESRP2
Procavia capensis
ENSPCAG00000005215
I
0.782
ESRP2
Ochotona princeps
ENSOPRG00000013401
I
0.773
ESRP1
Oryctolagus cuniculus
ENSOCUG00000001316
I
0.986
ESRP2
Oryctolagus cuniculus
ENSOCUG00000001242
I
0.722
ESRP2
Ornithorhynchus anatinus
ENSOANG00000010972
I
0.778
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.972
Esrp2
Mus musculus
ENSMUSG00000084128
I
0.718
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.977
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.968
ESRP2
Monodelphis domestica
ENSMODG00000005183
I
0.801
ESRP2
Macaca mulatta
ENSMMUG00000021846
I
0.722
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.986
ESRP2
Myotis lucifugus
ENSMLUG00000005934
I
0.778
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
1.000
ESRP2
Pan troglodytes
ENSPTRG00000008261
I
0.727
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
1.000
AAH44002
Xenopus laevis
AAH44002
I
0.931
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.986
Ame_R011562
Ailuropoda melanoleuca
Ame_R011562
I
0.722
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.931
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.977
ESRP2
Tursiops truncatus
ENSTTRG00000014613
I
0.718
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.977
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.981
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.931
RBM35B
Taeniopygia guttata
ENSTGUG00000006986
I
0.819
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.986
ESRP2
Sorex araneus
ENSSARG00000014176
I
0.773
Esrp2
Rattus norvegicus
ENSRNOG00000023177
I
0.773
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.977
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.986
ESRP2
Microcebus murinus
ENSMICG00000011382
I
0.708
ESRP2
Anolis carolinensis
ENSACAG00000009900
I
0.806
ESRP1
Erinaceus europaeus
ENSEEUG00000001673
I
0.981
LOC100066567
Equus caballus
ENSECAG00000017375
I
0.718
ESRP1
Equus caballus
ENSECAG00000000784
I
0.986
Esrp2
Dipodomys ordii
ENSDORG00000000665
I
0.787
ESRP2
Dasypus novemcinctus
ENSDNOG00000018588
I
0.778
esrp2
Danio rerio
ENSDARG00000018814
I
0.829
esrp1
Danio rerio
ENSDARG00000011245
I
0.829
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.991
LOC100388530
Callithrix jacchus
ENSCJAG00000015709
I
0.722
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.995
ESRP2
Canis familiaris
ENSCAFG00000020320
I
0.722
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.986
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.921
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.981
ESRP2
Bos taurus
ENSBTAG00000004375
I
0.722
ESRP2
Erinaceus europaeus
ENSEEUG00000014033
I
0.718
ESRP2
Echinops telfairi
ENSETEG00000006068
I
0.787
ESRP2
Gorilla gorilla
ENSGGOG00000010150
I
0.731
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
1.000
ESRP2
Loxodonta africana
ENSLAFG00000014609
I
0.769
ESRP2
Macropus eugenii
ENSMEUG00000014322
I
0.829
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.921
ESRP2_CHICK
Gallus gallus
ENSGALG00000003374
I
0.829
ESRP2
Meleagris gallopavo
ENSMGAG00000003943
I
0.829
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.921
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.991
ESRP2
Felis catus
ENSFCAG00000010419
I
0.722
ESRP1
Felis catus
ENSFCAG00000009920
I
0.986
ESRP1
Loxodonta africana
ENSLAFG00000001498
I
0.991
estExt_gwp.C_3900052
Branchiostoma floridae
estExt_gwp.C_3900052
N
0.708
ESRP1
Myotis lucifugus
ENSMLUG00000001816
N
0.806
ESRP1
Takifugu rubripes
ENSTRUG00000009287
N
0.757
ESRP1
Tetraodon nigroviridis
ENSTNIG00000018367
N
0.761
ESRP1
Tupaia belangeri
ENSTBEG00000006654
N
0.988
ESRP1
Dasypus novemcinctus
ENSDNOG00000015648
N
0.971
ESRP2
Gasterosteus aculeatus
ENSGACG00000016359
N
0.788
Esrp1
Dipodomys ordii
ENSDORG00000011987
N
0.819
ESRP1
Ochotona princeps
ENSOPRG00000010595
N
0.829
estExt_gwp.C_3900044
Branchiostoma floridae
estExt_gwp.C_3900044
N
0.708