RBM4 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000239306 T37369_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M050_0.6		 Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		(Direct)
RBM4
M109_0.6		 Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M050_0.6 RRM 4 66
M050_0.6 RRM 80 142
M050_0.6 CCHC ZF 160 177
M109_0.6 RRM 4 66
M109_0.6 RRM 80 142
M109_0.6 CCHC ZF 160 177

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000311747 RRM 3 66
ENSP00000311747 RRM 81 143
ENSP00000377548 RRM 3 66
ENSP00000377548 RRM 81 118
ENSP00000386518 RRM 3 66
ENSP00000386518 RRM 81 118
ENSP00000386995 RRM 3 66
ENSP00000386995 RRM 81 143
ENSP00000395880 RRM 3 66
ENSP00000395880 RRM 81 120
ENSP00000414650 RRM 3 66
ENSP00000414650 RRM 81 124
ENSP00000421279 RRM 3 66
ENSP00000421279 RRM 81 117
ENSP00000422301 RRM 3 66
ENSP00000422301 RRM 81 120
ENSP00000422779 RRM 3 66
ENSP00000422779 RRM 81 116
ENSP00000423790 RRM 3 66
ENSP00000423790 RRM 81 118
ENSP00000423790 CCHC ZF 135 152
ENSP00000425446 RRM 4 66
ENSP00000425446 RRM 80 142
ENSP00000425446 CCHC ZF 160 177
ENSP00000425760 RRM 4 66
ENSP00000425760 RRM 80 142
ENSP00000425760 CCHC ZF 160 177

Links

Other RRM family RBPs
Other Homo sapiens RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SAMD4A Homo sapiens ENSG00000020577 D 0.000
SAMD4A Pteropus vampyrus ENSPVAG00000016060 I 0.000
SMAG1_RAT Rattus norvegicus ENSRNOG00000010489 I 0.000
Samd4b Rattus norvegicus ENSRNOG00000019831 I 0.000
SAMD4A Sorex araneus ENSSARG00000014067 I 0.000
SAMD4A Sus scrofa ENSSSCG00000005050 I 0.000
SAMD4B Sus scrofa ENSSSCG00000010706 I 0.000
SAMD4B Spermophilus tridecemlineatus ENSSTOG00000003379 I 0.000
SAMD4A Spermophilus tridecemlineatus ENSSTOG00000015276 I 0.000
SAMD4B Pteropus vampyrus ENSPVAG00000011118 I 0.000
SAMD4B Pan troglodytes ENSPTRG00000010961 I 0.000
SAMD4A Oryctolagus cuniculus ENSOCUG00000003420 I 0.000
ENSOPRG00000011493 Ochotona princeps ENSOPRG00000011493 I 0.000
SAMD4A Oryzias latipes ENSORLG00000005039 I 0.000
SAMD4B Procavia capensis ENSPCAG00000010263 I 0.000
SAMD4A Procavia capensis ENSPCAG00000010880 I 0.000
ENSPPYG00000005832 Pongo pygmaeus ENSPPYG00000005832 I 0.000
ENSPPYG00000009963 Pongo pygmaeus ENSPPYG00000009963 I 0.000
SAMD4A Pan troglodytes ENSPTRG00000006364 I 0.000
SAMD4B Oryctolagus cuniculus ENSOCUG00000000343 I 0.000
SAMD4B Tupaia belangeri ENSTBEG00000003890 I 0.000
SAMD4A Tupaia belangeri ENSTBEG00000010696 I 0.000
SAMD4B Vicugna pacos ENSVPAG00000011788 I 0.000
samd4a Xenopus tropicalis ENSXETG00000012217 I 0.000
ISCW008726 Ixodes scapularis ISCW008726 I 0.000
e_gw.8.543.1 Branchiostoma floridae e_gw.8.543.1 I 0.000
Ame_R016005 Ailuropoda melanoleuca Ame_R016005 I 0.000
AAH74364 Xenopus laevis AAH74364 I 0.000
AAH89262 Xenopus laevis AAH89262 I 0.000
AAH92035 Xenopus laevis AAH92035 I 0.000
SAMD4A Tursiops truncatus ENSTTRG00000008280 I 0.000
SAMD4B Tursiops truncatus ENSTTRG00000003554 I 0.000
SAMD4A Taeniopygia guttata ENSTGUG00000013086 I 0.000
ENSTGUG00000014163 Taeniopygia guttata ENSTGUG00000014163 I 0.000
ENSTNIG00000016193 Tetraodon nigroviridis ENSTNIG00000016193 I 0.000
ENSTNIG00000018801 Tetraodon nigroviridis ENSTNIG00000018801 I 0.000
ENSTRUG00000006063 Takifugu rubripes ENSTRUG00000006063 I 0.000
SAMD4A Takifugu rubripes ENSTRUG00000015288 I 0.000
SAMD4B Tarsius syrichta ENSTSYG00000003909 I 0.000
SAMD4A Tarsius syrichta ENSTSYG00000010165 I 0.000
Q5FWP2 Xenopus laevis Q5FWP2 I 0.000
Samd4b Mus musculus ENSMUSG00000037513 I 0.000
Samd4 Mus musculus ENSMUSG00000021838 I 0.000
ENSDARG00000077784 Danio rerio ENSDARG00000077784 I 0.000
SAMD4A Dasypus novemcinctus ENSDNOG00000015876 I 0.000
Samd4 Dipodomys ordii ENSDORG00000009363 I 0.000
Samd4b Dipodomys ordii ENSDORG00000013482 I 0.000
SAMD4A Equus caballus ENSECAG00000010681 I 0.000
SAMD4B Equus caballus ENSECAG00000015551 I 0.000
SAMD4A Erinaceus europaeus ENSEEUG00000005738 I 0.000
SAMD4B Echinops telfairi ENSETEG00000004346 I 0.000
SAMD4A Danio rerio ENSDARG00000075759 I 0.000
SAMD4A Cavia porcellus ENSCPOG00000014637 I 0.000
SAMD4A Anolis carolinensis ENSACAG00000016355 I 0.000
A6QPG4_BOVIN Bos taurus ENSBTAG00000001468 I 0.000
SAMD4B Bos taurus ENSBTAG00000009785 I 0.000
SAMD4B Canis familiaris ENSCAFG00000005568 I 0.000
SAMD4A Canis familiaris ENSCAFG00000014940 I 0.000
SAMD4B Callithrix jacchus ENSCJAG00000014078 I 0.000
SAMD4A Callithrix jacchus ENSCJAG00000018182 I 0.000
ENSCPOG00000005932 Cavia porcellus ENSCPOG00000005932 I 0.000
SAMD4A Echinops telfairi ENSETEG00000018627 I 0.000
SAMD4A Felis catus ENSFCAG00000000005 I 0.000
SAMD4B Microcebus murinus ENSMICG00000006081 I 0.000
SAMD4A Microcebus murinus ENSMICG00000016212 I 0.000
SAMD4B Myotis lucifugus ENSMLUG00000002924 I 0.000
SAMD4A Myotis lucifugus ENSMLUG00000004192 I 0.000
SAMD4A Macaca mulatta ENSMMUG00000010315 I 0.000
SAMD4B Macaca mulatta ENSMMUG00000023802 I 0.000
SAMD4A Monodelphis domestica ENSMODG00000011669 I 0.000
ENSMODG00000013478 Monodelphis domestica ENSMODG00000013478 I 0.000
SAMD4A Meleagris gallopavo ENSMGAG00000013686 I 0.000
SAMD4A Macropus eugenii ENSMEUG00000013419 I 0.000
SAMD4B Homo sapiens ENSG00000179134 I 0.000
ENSGACG00000010797 Gasterosteus aculeatus ENSGACG00000010797 I 0.000
SAMD4A Gasterosteus aculeatus ENSGACG00000017331 I 0.000
SAMD4A Gallus gallus ENSGALG00000012203 I 0.000
SAMD4A Gorilla gorilla ENSGGOG00000000673 I 0.000
SAMD4B Gorilla gorilla ENSGGOG00000024088 I 0.000
SAMD4B Loxodonta africana ENSLAFG00000011957 I 0.000
SAMD4A Loxodonta africana ENSLAFG00000013245 I 0.000
ENSACAG00000008965 Anolis carolinensis ENSACAG00000008965 I 0.000