CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP2_CHICK
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000003374
T37622_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000005323
RRM
228
297
IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIE
ENSGALP00000005323
RRM
329
401
IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIE
ENSGALP00000005323
RRM
449
521
VRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRYVE
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.000
GE21305
Drosophila yakuba
FBgn0238572
N
0.000
GK17751
Drosophila willistoni
FBgn0219750
N
0.000
GJ12391
Drosophila virilis
FBgn0199634
N
0.000
GM24938
Drosophila sechellia
FBgn0179800
N
0.000
GI12487
Drosophila mojavensis
FBgn0135244
N
0.000
GH16406
Drosophila grimshawi
FBgn0123877
N
0.000
GG15082
Drosophila erecta
FBgn0107336
N
0.000
Unr
Drosophila melanogaster
FBgn0035895
N
0.000
AGAP004937
Anopheles gambiae
AGAP004937
N
0.000
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.000