ELAVL1 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000009130 T41619_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.981
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.981
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.981
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.981
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.981
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.981
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.783
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.783
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.783
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.759
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.759
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000008183 RRM 22 92
ENSSTOP00000008183 RRM 108 173
ENSSTOP00000008183 RRM 243 313

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_01641 Arthroderma benhamiae ARB_01641 N 0.000
AFLA_066270 Aspergillus flavus CADAFLAG00008051 N 0.000
AFUA_1G12590 Aspergillus fumigatus CADAFUAG00007294 N 0.000
An08g05260 Aspergillus niger CADANGAG00006847 N 0.000
ANIA_01045 Aspergillus nidulans CADANIAG00001597 N 0.000
AO090001000218 Aspergillus oryzae CADAORAG00000197 N 0.000
ATEG_00450 Aspergillus terreus CADATEAG00009019 N 0.000
NFIA_012960 Neosartorya fischeri CADNFIAG00001025 N 0.000
fgenesh1_pg.00083_#_507 Aspergillus carbonarius fgenesh1_pg.00083_#_507 N 0.000
Pc13g13010 Penicillium chrysogenum Pc13g13010 N 0.000
ACLA_022870 Aspergillus clavatus CADACLAG00002218 N 0.000
UREG_03619 Uncinocarpus reesii UREG_03619 N 0.000
TRV_05156 Trichophyton verrucosum TRV_05156 N 0.000
CIMG_06864 Coccidioides immitis CIMG_06864 N 0.000
CPSG_09523 Coccidioides posadasii CPSG_09523 N 0.000
HCAG_00786 Histoplasma capsulatum HCAG_00786 N 0.000
MCYG_01238 Microsporum canis MCYG_01238 N 0.000
MGYG_01788 Microsporum gypseum MGYG_01788 N 0.000
PABG_00372 Paracoccidioides brasiliensis PABG_00372 N 0.000
TEQG_02174 Trichophyton equinum TEQG_02174 N 0.000
TERG_07656 Trichophyton rubrum TERG_07656 N 0.000
TESG_01444 Trichophyton tonsurans TESG_01444 N 0.000
PMAA_068330 Penicillium marneffei PMAA_068330 N 0.000