ELAVL1 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000009130 T41619_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.981
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.981
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.981
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.981
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.981
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.981
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.783
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.783
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.783
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.759
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.759
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000008183 RRM 22 92
ENSSTOP00000008183 RRM 108 173
ENSSTOP00000008183 RRM 243 313

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.981
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.981
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.981
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.981
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.981
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.981
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.981
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.981
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.981
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.981
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.981
ELAVL1 Homo sapiens ENSG00000066044 D 0.981
ELAVL1 Felis catus ENSFCAG00000014947 I 0.981
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.976
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.976
LOC100060819 Equus caballus ENSECAG00000019459 I 0.976
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.972
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.972
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.972
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.972
Elavl1 Mus musculus ENSMUSG00000040028 I 0.972
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.972
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.972
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.972
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.967
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.962
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.948
Q5U259 Xenopus laevis Q5U259 I 0.943
AAH86269 Xenopus laevis AAH86269 I 0.943
AAA96942 Xenopus laevis AAA96942 I 0.938
AAI16460 Xenopus laevis AAI16460 I 0.892
Q1JQ73 Xenopus laevis Q1JQ73 I 0.892
elavl1 Danio rerio ENSDARG00000038695 I 0.877
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.869
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.865
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.858
hug Danio rerio ENSDARG00000016405 I 0.854
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.854
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.844
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.840
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.816
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.815
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.810
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.810
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.806
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.806
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.806
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.801
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.788
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.783
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.783
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.783
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.783
Elavl2 Mus musculus ENSMUSG00000008489 I 0.783
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.783
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.783
ELAVL2 Equus caballus ENSECAG00000020142 I 0.783
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.783
ELAVL2 Homo sapiens ENSG00000107105 D 0.783
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.783
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.783
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.783
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.783
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.783
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.783
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.783
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.783
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.783
AAI70539 Xenopus laevis AAI70539 I 0.783
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.783
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.783
AAH94189 Xenopus laevis AAH94189 I 0.783
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.783
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.783
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.783
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.782
Q91903 Xenopus laevis Q91903 I 0.779
AAA96943 Xenopus laevis AAA96943 I 0.779
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.778
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.778
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.778
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.777
CAA59430 Xenopus laevis CAA59430 I 0.775
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.774
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.774
elavl2 Danio rerio ENSDARG00000040732 I 0.774
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.764
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.764
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.759
Elavl4 Mus musculus ENSMUSG00000028546 I 0.759
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.759
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.759
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.759
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.759
AAH99348 Xenopus laevis AAH99348 I 0.759
AAA96945 Xenopus laevis AAA96945 I 0.759
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.759
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.759
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.759
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.759
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.759
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.759
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.759
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.759
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.759
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.759
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.759
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.759
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.759
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.759
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.759
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.759
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.759
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.759
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.759
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.759
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.759
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.759
LOC100051268 Equus caballus ENSECAG00000022284 I 0.759
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.759
ELAVL4 Homo sapiens ENSG00000162374 D 0.759
CBF67567 Xenopus laevis CBF67567 I 0.759
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.759
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.759
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.759
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.759
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.759
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.759
CBU92440 Xenopus laevis CBU92440 I 0.759
elavl4 Danio rerio ENSDARG00000045639 I 0.757
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.756
D3ZE54_RAT Rattus norvegicus ENSRNOG00000008657 I 0.750
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.750
elavl3 Danio rerio ENSDARG00000014420 I 0.750
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.750
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.746
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.746
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.743
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.741
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.740
AAI69769 Xenopus laevis AAI69769 I 0.737
AAA96944 Xenopus laevis AAA96944 I 0.737
Q91584 Xenopus laevis Q91584 I 0.737
ELAVL3 Homo sapiens ENSG00000196361 I 0.736
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.736
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.736
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.736
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.736
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.736
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.736
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.736
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.736
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.736
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.734
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.731
Elavl3 Mus musculus ENSMUSG00000003410 I 0.731
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.726
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.722
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.717
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.717
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.716
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.712
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.711
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.702