CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH3
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000013788
T42117_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.757
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000016790
RRM
13
84
VRIRGLPWSCTQEEVASFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNALAKDRKYMGHRYIE
ENSTNIP00000016790
RRM
113
182
LRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIE
ENSTNIP00000016790
RRM
296
363
VHMRGLPFRATENDIAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIE
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI4G15700
Brachypodium distachyon
BRADI4G15700
N
0.000
Glyma13g15790.1
Glycine max
Glyma13g15790.1
N
0.000
Glyma20g11270.1
Glycine max
Glyma20g11270.1
N
0.000
GRMZM2G150813
Zea mays
GRMZM2G150813
N
0.000