cassava12742.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12742.valid.m1 T49111_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12742.valid.m1 RRM 97 159
cassava12742.valid.m1 RRM 225 291
cassava12742.valid.m1 RRM 335 401

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.736
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.888
cassava16884.m1 Manihot esculenta cassava16884.m1 N 1.000
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.873
estExt_Genewise1.C_360029 Physcomitrella patens estExt_Genewise1.C_360029 N 0.714
Glyma16g27970.1 Glycine max Glyma16g27970.1 N 0.860
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.845