Medtr1g124970 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr1g124970 T54441_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g124970.1 RRM 8 67
Medtr1g124970.1 RRM 103 168
Medtr1g124970.1 RRM 258 324
Medtr1g124970.1 RRM 368 434
Medtr1g124970.2 RRM 67 132
Medtr1g124970.2 RRM 222 288
Medtr1g124970.2 RRM 332 398
Medtr1g124970.3 RRM 8 74
Medtr1g124970.3 RRM 102 168

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.896
Glyma16g27970.1 Glycine max Glyma16g27970.1 N 0.885
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.885
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.881
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.874
ppa005775m Prunus persica ppa005775m N 0.846
cassava12742.valid.m1 Manihot esculenta cassava12742.valid.m1 N 0.845
cassava16884.m1 Manihot esculenta cassava16884.m1 N 0.845
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.840
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.837
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.837
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.837
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.837
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.835
PK14373.1 Cannabis sativa PK14373.1 N 0.835
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.833
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.831
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.831
29863.m001059 Ricinus communis 29863.m001059 N 0.829
mgf010164m Mimulus guttatus mgf010164m N 0.823
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.816
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.814
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.795
chr5.CM0052.270.nd Lotus japonicus chr5.CM0052.270.nd N 0.784
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.720
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.719
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.716
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.714
estExt_Genewise1.C_360029 Physcomitrella patens estExt_Genewise1.C_360029 N 0.705