B9GT89_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s06660 T45454_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s06660.1 RRM 8 86
POPTR_0002s06660.1 RRM 107 169
POPTR_0002s06660.1 RRM 248 314
POPTR_0002s06660.1 RRM 358 424
POPTR_0002s06660.2 RRM 8 86
POPTR_0002s06660.2 RRM 107 169
POPTR_0002s06660.2 RRM 247 313
POPTR_0002s06660.2 RRM 357 423
POPTR_0002s06660.3 RRM 3 62
POPTR_0002s06660.3 RRM 141 207
POPTR_0002s06660.3 RRM 251 317

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.891
cassava16884.m1 Manihot esculenta cassava16884.m1 N 0.888
cassava12742.valid.m1 Manihot esculenta cassava12742.valid.m1 N 0.888
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.880
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.880
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.880
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.880
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.870
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.862
29863.m001059 Ricinus communis 29863.m001059 N 0.859
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.851
Glyma16g27970.1 Glycine max Glyma16g27970.1 N 0.850
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.844
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.837
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.835
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.830
mgf010164m Mimulus guttatus mgf010164m N 0.830
PK14373.1 Cannabis sativa PK14373.1 N 0.826
ppa005775m Prunus persica ppa005775m N 0.822
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.819
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.815
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.804
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.793
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.764
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.714
SB09G021560 Sorghum bicolor Sb09g021560 N 0.707
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.703