Cucsa.365870 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.365870 T49658_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.365870.1 RRM 8 65
Cucsa.365870.1 RRM 108 169
Cucsa.365870.1 RRM 259 325
Cucsa.365870.1 RRM 369 435
Cucsa.365870.2 RRM 8 65
Cucsa.365870.2 RRM 108 166
Cucsa.365870.2 RRM 237 303
Cucsa.365870.2 RRM 347 413
Cucsa.365870.3 RRM 8 65
Cucsa.365870.3 RRM 108 169
Cucsa.365870.3 RRM 235 301
Cucsa.365870.3 RRM 345 411
Cucsa.365870.4 RRM 72 133
Cucsa.365870.4 RRM 223 289
Cucsa.365870.4 RRM 333 399

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK14373.1 Cannabis sativa PK14373.1 N 0.906
ppa005775m Prunus persica ppa005775m N 0.898
cassava16884.m1 Manihot esculenta cassava16884.m1 N 0.873
cassava12742.valid.m1 Manihot esculenta cassava12742.valid.m1 N 0.873
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.873
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.869
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.862
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.862
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.856
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.856
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.856
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.856
Glyma16g27970.1 Glycine max Glyma16g27970.1 N 0.855
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.853
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.845
29863.m001059 Ricinus communis 29863.m001059 N 0.840
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.839
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.831
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.831
mgf010164m Mimulus guttatus mgf010164m N 0.826
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.820
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.817
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.795
MDP0000043338 Malus x domestica MDP0000043338 N 0.737
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.735
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.728
SB09G021560 Sorghum bicolor Sb09g021560 N 0.725
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.719
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.717
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.712
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.710