CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G145034
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G145034
T54157_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G145034_P01
RRM
293
356
LEDEVASECAKYGTVSRVLIFEITQADFPADEAVRIFIQFERAEEATKAMIDLQGRFFGGRVVQ
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ008053
Culex pipiens
CpipJ_CPIJ008053
N
0.000
Sjc_0084270
Schistosoma japonicum
Sjc_0084270
N
0.000
NCBI_GNO_0100356
Daphnia pulex
NCBI_GNO_0100356
N
0.000
PHUM515430
Pediculus humanus
PHUM515430
N
0.000
GE14378
Drosophila yakuba
FBgn0231986
N
0.000
GK21919
Drosophila willistoni
FBgn0223904
N
0.000
GM18306
Drosophila sechellia
FBgn0173213
N
0.000
GL11666
Drosophila persimilis
FBgn0149275
N
0.000
GG22940
Drosophila erecta
FBgn0115097
N
0.000
GF11371
Drosophila ananassae
FBgn0088411
N
0.000
snama
Drosophila melanogaster
FBgn0086129
N
0.000
GA16823-RA
Drosophila pseudoobscura
FBgn0076837
N
0.000
CPIJ008053
Culex quinquefasciatus
CPIJ008053
N
0.000
AT1G54930
Arabidopsis thaliana
AT1G54930-TAIR-G
N
0.000
AGAP011217
Anopheles gambiae
AGAP011217
N
0.000
AAEL002729
Aedes aegypti
AAEL002729
N
0.000
nasonia_NCBI_hmm348274
Nasonia vitripennis
nasonia_NCBI_hmm348274
N
0.000
DGIL_AUG5s1501g15p2t1
Acyrtosiphon pisum
DGIL_AUG5s1501g15p2t1
N
0.000
Smp_039640
Schistosoma mansoni
Smp_039640
N
0.000