AT1G54930 (Arabidopsis thaliana)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 AT1G54930-TAIR-G T09316_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G54930.1-P CCHC ZF 4 21

Links

Other CCHC ZF family RBPs
Other Arabidopsis thaliana RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002894567.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003658 N 0.889
LOC_Os12g39190 Oryza sativa LOC_Os12g39190 N 0.778
LOC_Os08g39174 Oryza sativa LOC_Os08g39174 N 0.778
CNBG_1048 Cryptococcus neoformans CNBG_1048 N 0.778
LOC_Os05g49600 Oryza sativa LOC_Os05g49600 N 0.778
LOC_Os03g20690 Oryza sativa LOC_Os03g20690 N 0.778
LOC_Os04g04120 Oryza sativa LOC_Os04g04120 N 0.778
LOC_Os04g06220 Oryza sativa LOC_Os04g06220 N 0.778
LOC_Os12g22820 Oryza sativa LOC_Os12g22820 N 0.722
nasonia_NCBI_hmm348274 Nasonia vitripennis nasonia_NCBI_hmm348274 N 0.722
LOC_Os12g06580 Oryza sativa LOC_Os12g06580 N 0.722
LOC_Os12g25080 Oryza sativa LOC_Os12g25080 N 0.722
SB04G020190 Sorghum bicolor Sb04g020190 N 0.722
amel4_ncbi_hmm4691 Apis mellifera amel4_ncbi_hmm4691 N 0.722
LOC_Os10g21730 Oryza sativa LOC_Os10g21730 N 0.722
LOC_Os07g31590 Oryza sativa LOC_Os07g31590 N 0.722
LOC_Os05g49110 Oryza sativa LOC_Os05g49110 N 0.722
LOC_Os04g41730 Oryza sativa LOC_Os04g41730 N 0.722
LOC_Os01g34630 Oryza sativa LOC_Os01g34630 N 0.722
LOC_Os07g12840 Oryza sativa LOC_Os07g12840 N 0.722
LOC_Os07g23400 Oryza sativa LOC_Os07g23400 N 0.722
LOC_Os07g41110 Oryza sativa LOC_Os07g41110 N 0.722
LOC_Os07g27510 Oryza sativa LOC_Os07g27510 N 0.722
LOC_Os08g17700 Oryza sativa LOC_Os08g17700 N 0.722