CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EAT88191.2
(
Phaeosphaeria nodorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EAT88191.2
T54310_0.6
NCBI (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EAT88191.2
RRM
4
84
LFIGGLAWHTDDGTLRQKFEEFGQVEEAVSDTLVAPVTVVVKDRDTGRSRGFGFVRFANDADADAAMNALNNEEFDGRRIR
Links
Other
RRM
family RBPs
Other
Phaeosphaeria nodorum
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.704
genemark.1698_g
Thielavia terrestris
genemark.1698_g
N
0.704
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.741
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.753
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.716
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.704
estExt_fgenesh1_kg.C_chr_50164
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_50164
N
0.728
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.877
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.778
AB02963.1
Alternaria brassicicola
AB02963.1
N
0.790