CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AB02963.1
(
Alternaria brassicicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AB02963.1
T55396_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AB02963.1
RRM
4
74
LFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDSEADAAMQALNNEEFDGRRIR
Links
Other
RRM
family RBPs
Other
Alternaria brassicicola
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.972
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.915
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.901
GSTUMT00008723001
Tuber melanosporum
GSTUMT00008723001
N
0.831
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.817
estExt_fgenesh1_kg.C_chr_50164
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_50164
N
0.803
EAT88191.2
Phaeosphaeria nodorum
EAT88191.2
N
0.790
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.789
ACLA_036560
Aspergillus clavatus
CADACLAG00003885
N
0.789
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.789
NFIA_068550
Neosartorya fischeri
CADNFIAG00006348
N
0.775
AFUA_3G08580
Aspergillus fumigatus
CADAFUAG00005852
N
0.775
FGSG_00442
Fusarium graminearum
FGSG_00442
N
0.775
genemark.1698_g
Thielavia terrestris
genemark.1698_g
N
0.775
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.775
FVEG_00902
Fusarium verticillioides
FVEG_00902
N
0.761
FOXG_00610
Fusarium oxysporum
FOXG_00610
N
0.761
Pc06g01290
Penicillium chrysogenum
Pc06g01290
N
0.761
Pa_1_13615
Podospora anserina
Pa_1_13615
N
0.746
VDAG_03252
Verticillium dahliae
VDAG_03252
N
0.746
ANIA_02989
Aspergillus nidulans
CADANIAG00010091
N
0.732
gw1.9.437.1
Trichoderma virens
gw1.9.437.1
N
0.732
TESG_06069
Trichophyton tonsurans
TESG_06069
N
0.732
PABG_01590
Paracoccidioides brasiliensis
PABG_01590
N
0.732
TERG_04706
Trichophyton rubrum
TERG_04706
N
0.732
MCYG_06115
Microsporum canis
MCYG_06115
N
0.718
CPSG_09452
Coccidioides posadasii
CPSG_09452
N
0.718
An02g12270
Aspergillus niger
CADANGAG00002750
N
0.718
BDBG_01954
Blastomyces dermatitidis
BDBG_01954
N
0.718
CIMG_07653
Coccidioides immitis
CIMG_07653
N
0.718
gw1.2.3269.1
Myceliophthora thermophila
gw1.2.3269.1
N
0.704
MGYG_01973
Microsporum gypseum
MGYG_01973
N
0.704
NCU02736
Neurospora crassa
NCU02736
N
0.704
UREG_07630
Uncinocarpus reesii
UREG_07630
N
0.704
CHGG_02784
Chaetomium globosum
CHGG_02784
N
0.703