fgenesh1_pm.00118_#_519 (Aspergillus carbonarius)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.00118_#_519 T56572_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CADANIAG00004740
M241_0.6 		Aspergillus nidulans UACUAMK RNAcompete
Ray et al.(2013)
RNCMPT00287 		0.972
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.00118_#_519 RRM 256 326

Links

Other RRM family RBPs
Other Aspergillus carbonarius RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CADANIAG00004740 Aspergillus nidulans CADANIAG00004740 D 0.972
PMAA_072470 Penicillium marneffei PMAA_072470 I 0.873
estExt_fgenesh1_pg.C_20919 Myceliophthora thermophila estExt_fgenesh1_pg.C_20919 I 0.775
e_gw1.3.1071.1 Trichoderma reesei e_gw1.3.1071.1 I 0.803
e_gw1.1.2591.1 Trichoderma atroviride e_gw1.1.2591.1 I 0.803
NCU03099 Neurospora crassa NCU03099 I 0.746
NFIA_053730 Neosartorya fischeri CADNFIAG00004585 I 0.915
ATEG_05852 Aspergillus terreus CADATEAG00002953 I 0.972
AO090003000122 Aspergillus oryzae CADAORAG00000798 I 1.000
An11g02050 Aspergillus niger CADANGAG00008541 I 0.986
AFUA_6G08040 Aspergillus fumigatus CADAFUAG00002290 I 0.915
estExt_fgenesh3_kg.C_70295 Neurospora discreta estExt_fgenesh3_kg.C_70295 I 0.746
estExt_Genewise1.C_320079 Cochliobolus heterostrophus C5 estExt_Genewise1.C_320079 I 0.803
Pc12g10950 Penicillium chrysogenum Pc12g10950 I 0.803
Pa_1_11770 Podospora anserina Pa_1_11770 I 0.775
gw1.6.1720.1 Cryphonectria parasitica gw1.6.1720.1 I 0.817
GSTUMT00010522001 Tuber melanosporum GSTUMT00010522001 I 0.901
AB09441.1 Alternaria brassicicola AB09441.1 I 0.803
EAT76715.1 Phaeosphaeria nodorum EAT76715.1 I 0.761
gw1.33.170.1 Trichoderma virens gw1.33.170.1 I 0.817
fgenesh1_pg.sca_1_chr1_3_0000264 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000264 I 0.803
estExt_Genewise1Plus.C_50687 Neurospora tetrasperma estExt_Genewise1Plus.C_50687 I 0.746
estExt_Genewise1Plus.C_13260 Thielavia terrestris estExt_Genewise1Plus.C_13260 I 0.775
AFLA_036830 Aspergillus flavus CADAFLAG00003057 I 1.000
ACLA_082600 Aspergillus clavatus CADACLAG00007506 I 0.930
HCAG_05883 Histoplasma capsulatum HCAG_05883 I 0.915
GLRG_01583 Colletotrichum graminicola GLRG_01583 I 0.831
FVEG_01237 Fusarium verticillioides FVEG_01237 I 0.789
FOXG_00280 Fusarium oxysporum FOXG_00280 I 0.789
FGSG_11902 Fusarium graminearum FGSG_11902 I 0.803
CPSG_02060 Coccidioides posadasii CPSG_02060 I 0.915
CIMG_01152 Coccidioides immitis CIMG_01152 I 0.915
CHGG_00842 Chaetomium globosum CHGG_00842 I 0.761
BDBG_03382 Blastomyces dermatitidis BDBG_03382 I 0.915
BC1G_02746 Botrytis cinerea BC1G_02746 I 0.859
MCYG_08625 Microsporum canis MCYG_08625 I 0.930
MGG_01274 Magnaporthe oryzae MGG_01274 I 0.775
VDAG_04412 Verticillium dahliae VDAG_04412 I 0.775
UREG_01087 Uncinocarpus reesii UREG_01087 I 0.915
TRV_04123 Trichophyton verrucosum TRV_04123 I 0.944
TESG_08545 Trichophyton tonsurans TESG_08545 I 0.944
TERG_02769 Trichophyton rubrum TERG_02769 I 0.944
TEQG_04534 Trichophyton equinum TEQG_04534 I 0.944
SS1G_09871 Sclerotinia sclerotiorum SS1G_09871 I 0.845
SNOG_15877 Stagonospora nodorum SNOG_15877 I 0.761
PTRG_02274 Pyrenophora tritici repentis PTRG_02274 I 0.803
PABG_01757 Paracoccidioides brasiliensis PABG_01757 I 0.930
ARB_07912 Arthroderma benhamiae ARB_07912 I 0.944
gw1.8.745.1 Mycosphaerella fijiensis gw1.8.745.1 N 0.746
gw1.6.1506.1 Mycosphaerella graminicola gw1.6.1506.1 N 0.732