CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
fgenesh1_pm.00118_#_519
(
Aspergillus carbonarius
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pm.00118_#_519
T56572_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.972
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.00118_#_519
RRM
256
326
LFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAREMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Aspergillus carbonarius
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm9262
Apis mellifera
amel4_ncbi_hmm9262
N
0.000
amel4_ncbi_hmm9262
Tribolium castaneum
amel4_ncbi_hmm9262
N
0.000
AGAP013044
Anopheles gambiae
AGAP013044
N
0.000
Clp
Drosophila melanogaster
FBgn0015621
N
0.000
GA17582-RA
Drosophila pseudoobscura
FBgn0077593
N
0.000
ISCW021476
Ixodes scapularis
ISCW021476
N
0.000
e_gw1.24.75.1
Daphnia pulex
e_gw1.24.75.1
N
0.000
e_gw1.98.132.1
Lottia gigantea
e_gw1.98.132.1
N
0.000