CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CADANIAG00004740
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00004740
T33620_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M241_0.6
RRM
51
121
LFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAREMQGKYIGSHPVL
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00004740
RRM
229
299
LFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAREMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.986
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.972
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.972
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.972
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.972
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.944
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.944
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.944
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.944
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.944
MCYG_08625
Microsporum canis
MCYG_08625
I
0.930
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.930
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.915
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.915
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.915
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.915
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.915
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.915
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.915
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.901
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.901
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.887
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.873
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.859
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.803
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.803
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.803
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.803
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.803
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.803
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.789
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.789
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.789
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.789
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.775
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.775
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.775
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.775
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.775
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.775
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.775
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.775
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.775
NCU03099
Neurospora crassa
NCU03099
I
0.746
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.746
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.746
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.746
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.732
gw1.8.745.1
Mycosphaerella fijiensis
gw1.8.745.1
N
0.732
gw1.6.1506.1
Mycosphaerella graminicola
gw1.6.1506.1
N
0.718