CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Minc05905
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc05905
T57798_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc05905
RRM
17
61
APGNPVIACQINLDKNFAFIEFRSIDETTAGMAFDGVNFMGQQLK
Minc05905
RRM
94
164
LFIGGLPNHLTSDQVKELLSAFGQLKAFNLVMDSVTGFSKGYAFCEYLDSTLTDQAIVGLNGMQLGDNRLL
Minc05905
RRM
225
284
LEDIRDECNKYGNVISLEIPRPGYEERGVGKVFVEFQSKEECQKAQAALTGRKFSNRVVV
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100400743
Callithrix jacchus
ENSCJAG00000017128
I
0.000
U2af2
Dipodomys ordii
ENSDORG00000003250
I
0.725
U2AF2
Felis catus
ENSFCAG00000011504
I
0.000
XM_001119590.1
Macaca mulatta
ENSMMUG00000019197
I
0.000
U2AF2
Pan troglodytes
ENSPTRG00000011523
I
0.725
ENSPCAG00000014399
Procavia capensis
ENSPCAG00000014399
N
0.000
ENSPPYG00000010429
Pongo pygmaeus
ENSPPYG00000010429
N
0.000