LOC100400743 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017128 T35641_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000031483 RRM 150 224
ENSCJAP00000031483 RRM 260 330
ENSCJAP00000031483 RRM 398 428
ENSCJAP00000031489 RRM 151 225
ENSCJAP00000031489 RRM 261 331
ENSCJAP00000031489 RRM 401 431

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.983
U2af2 Mus musculus ENSMUSG00000030435 I 0.851
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.851
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.851
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.851
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.851
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.851
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.851
U2AF2 Homo sapiens ENSG00000063244 D 0.851
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.851
LOC100050729 Equus caballus ENSECAG00000010110 I 0.851
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.846
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.846
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.841
AAH44032 Xenopus laevis AAH44032 I 0.841
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.841
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.817
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.817
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.812
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.808
u2af2a Danio rerio ENSDARG00000012505 I 0.808
U2AF2 Tarsius syrichta ENSTSYG00000007432 N 0.802
ENSPPYG00000010429 Pongo pygmaeus ENSPPYG00000010429 N 0.802
u2af2b Danio rerio ENSDARG00000011740 I 0.793
ENSPCAG00000014399 Procavia capensis ENSPCAG00000014399 N 0.780
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.760
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.752
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.743
U2AF2 Felis catus ENSFCAG00000011504 I 0.735
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.721
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.707
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.707