CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPCAG00000014399
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000014399
T40404_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000013460
RRM
181
225
APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK
ENSPCAP00000013460
RRM
261
330
LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDNXX
ENSPCAP00000013460
RRM
400
425
VEDVRDECSKYGLVKSIEIPRPVDGV
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000010429
Pongo pygmaeus
ENSPPYG00000010429
N
0.972
U2AF2
Tarsius syrichta
ENSTSYG00000007432
N
0.972
U2AF2
Felis catus
ENSFCAG00000011504
I
0.812
LOC100400743
Callithrix jacchus
ENSCJAG00000017128
I
0.780
U2af2
Dipodomys ordii
ENSDORG00000003250
I
0.775
U2AF2
Pan troglodytes
ENSPTRG00000011523
I
0.775
XM_001119590.1
Macaca mulatta
ENSMMUG00000019197
I
0.765