CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa007582m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa007582m
T58388_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa007582m
RRM
9
78
VYVGGLPYDATEDRVRRVFELYGSVIAVKIINDASTRGKCYGFVTFRNPRSAIHAINEMDGRTVDGRVIR
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK01699.1
Cannabis sativa
PK01699.1
N
0.000
Glyma01g43710.1
Glycine max
Glyma01g43710.1
N
0.000
Glyma11g01770.1
Glycine max
Glyma11g01770.1
N
0.000
mgf001224m
Mimulus guttatus
mgf001224m
N
0.000
mgf005614m
Mimulus guttatus
mgf005614m
N
0.000
AC233958.1_FG002
Zea mays
AC233958.1_FG002
N
0.000
GRMZM2G172399
Zea mays
GRMZM2G172399
N
0.000
Medtr5g008930
Medicago truncatula
Medtr5g008930
N
0.000
chr2.CM0018.160.nd
Lotus japonicus
chr2.CM0018.160.nd
N
0.000
e_gw1.06.00.460.1
Ostreococcus tauri
e_gw1.06.00.460.1
N
0.000
MDP0000238271
Malus x domestica
MDP0000238271
N
0.000
MDP0000242810
Malus x domestica
MDP0000242810
N
0.000
MDP0000279392
Malus x domestica
MDP0000279392
N
0.000
MDP0000749149
Malus x domestica
MDP0000749149
N
0.000
EuGene.0000060244
Micromonas pusilla
EuGene.0000060244
N
0.000
e_gw1.31.212.1
Physcomitrella patens
e_gw1.31.212.1
N
0.000
BRADI2G13390
Brachypodium distachyon
BRADI2G13390
N
0.000
BRADI2G36710
Brachypodium distachyon
BRADI2G36710
N
0.000
GSVIVG00026504001
Vitis vinifera
GSVIVG00026504001
N
0.000
A9PCB0_POPTR
Populus trichocarpa
POPTR_0001s26260
N
0.000
A9PID5_POPTR
Populus trichocarpa
POPTR_0009s05550
N
0.000
SB03G015351
Sorghum bicolor
Sb03g015351
N
0.000
SB09G003130
Sorghum bicolor
Sb09g003130
N
0.000
XM_002894275.1
Arabidopsis lyrata
scaffold_104917.1
N
0.000
30169.m006469
Ricinus communis
30169.m006469
N
0.000
cassava2157.valid.m1
Manihot esculenta
cassava2157.valid.m1
N
0.000
cassava30654.valid.m1
Manihot esculenta
cassava30654.valid.m1
N
0.000
Cucsa.055310
Cucumis sativus
Cucsa.055310
N
0.000
e_gw1.136.78.1
Physcomitrella patens
e_gw1.136.78.1
N
0.000
ppa007553m
Prunus persica
ppa007553m
N
0.000