CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
29807.m000475
(
Ricinus communis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
29807.m000475
T48692_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29807.m000475
RRM
9
78
IYVGSLPYSATEDTIRRVFGPYGSIVSVKIINDHGTRGKCYCFVTFRNPRSVSDAINDMNGKTIDGRVVR
Links
Other
RRM
family RBPs
Other
Ricinus communis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava24191.valid.m1
Manihot esculenta
cassava24191.valid.m1
N
0.914
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.771
Glyma17g12730.1
Glycine max
Glyma17g12730.1
N
0.757
Medtr8g118890
Medicago truncatula
Medtr8g118890
N
0.729
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.714
GSVIVG00015463001
Vitis vinifera
GSVIVG00015463001
N
0.714
ppa007582m
Prunus persica
ppa007582m
N
0.700