AAH45264 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH45264 T59478_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.979
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.881
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.804
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH45264 RRM 15 85
AAH45264 RRM 102 173

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sf3b4 Danio rerio ENSDARG00000018574 D 0.993
sap-49 Caenorhabditis elegans C08B11.5 D 0.804
Smp_067420 Schistosoma mansoni Smp_067420 D 0.881
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.783
PHUM263440 Pediculus humanus PHUM263440 I 0.874
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.797
SB01G020190 Sorghum bicolor Sb01g020190 I 0.783
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.874
30183.m001303 Ricinus communis 30183.m001303 I 0.811
99199 Helobdella robusta 99199 I 0.853
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.825
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.825
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.797
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.804
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.895
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.720
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.783
ISCW010601 Ixodes scapularis ISCW010601 I 0.916
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.790
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.993
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.993
Spx Drosophila melanogaster FBgn0015818 I 0.860
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.867
GF20385 Drosophila ananassae FBgn0097392 I 0.867
GG19577 Drosophila erecta FBgn0111779 I 0.867
GH17589 Drosophila grimshawi FBgn0125059 I 0.874
GI16317 Drosophila mojavensis FBgn0139065 I 0.874
GL21313 Drosophila persimilis FBgn0158906 I 0.867
GM12470 Drosophila sechellia FBgn0167407 I 0.860
GJ15655 Drosophila virilis FBgn0202845 I 0.874
GK19717 Drosophila willistoni FBgn0221715 I 0.867
GE16738 Drosophila yakuba FBgn0234234 I 0.867
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.762
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.993
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.853
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.993
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.776
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.776
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.755
MDP0000131129 Malus x domestica MDP0000131129 I 0.804
MDP0000320945 Malus x domestica MDP0000320945 I 0.804
Minc01580 Meloidogyne incognita Minc01580 I 0.762
Minc02568 Meloidogyne incognita Minc02568 I 0.762
Minc12926 Meloidogyne incognita Minc12926 I 0.762
ppa007508m Prunus persica ppa007508m I 0.790
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.888
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.846
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.888
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.804
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.783
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.776
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.741
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.769
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.958
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.860
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.902
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.720
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.881
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.769
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.958
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.804
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.790
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.720
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.741
AAH77458 Xenopus laevis AAH77458 I 1.000
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.993
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.748
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.769
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.783
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.783
CBG13349 Caenorhabditis briggsae CBG13349 I 0.790
CBN06124 Caenorhabditis brenneri CBN06124 I 0.804
CJA19238 Caenorhabditis japonica CJA19238 I 0.790
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.881
CRE01639 Caenorhabditis remanei CRE01639 I 0.804
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.993
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.993
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.972
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.806
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.916
AGAP001538 Anopheles gambiae AGAP001538 I 0.867
AAEL013795 Aedes aegypti AAEL013795 I 0.881
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.888
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.748
Bm1_43460 Brugia malayi Bm1_43460 I 0.783
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.720
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.881
LOAG_01189 Loa loa LOAG_01189 I 0.790
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.825
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.720
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.706
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.790
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.790
PK08238.1 Cannabis sativa PK08238.1 I 0.811
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.874
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.867
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.993
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.993
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.993
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.993
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.993
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.993
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.993
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.986
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.993
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.993
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.993
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.993
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.713
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.959
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.993
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.993
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.703
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.993
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.993
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.706
LOC100054350 Equus caballus ENSECAG00000024737 I 0.993
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.993
SF3B4 Homo sapiens ENSG00000143368 I 0.993
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.993
SF3B4 Gallus gallus ENSGALG00000013352 I 0.993
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.993
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.993
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.930
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.993
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.993
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.993
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.993
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.993