CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH45264
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH45264
T59478_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
sf3b4
M195_0.6
Danio rerio
CAAAAG
RNAcompete
Ray et al.(2013)
RNCMPT00224
0.979
Smp_067420
M201_0.6
Schistosoma mansoni
DWWUUUU
RNAcompete
Ray et al.(2013)
RNCMPT00232
0.881
sap-49
M261_0.6
Caenorhabditis elegans
CGUGUGAG
SELEX
Cook et al.(2011)
145_9163526
0.804
estExt_gwp_gw1.C_700168
M205_0.6
Physcomitrella patens
WUGGAG
RNAcompete
Ray et al.(2013)
RNCMPT00237
0.783
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH45264
RRM
15
85
VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIR
AAH45264
RRM
102
173
IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYLCNRPIT
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
129 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
sf3b4
Danio rerio
ENSDARG00000018574
D
0.993
sap-49
Caenorhabditis elegans
C08B11.5
D
0.804
Smp_067420
Schistosoma mansoni
Smp_067420
D
0.881
estExt_gwp_gw1.C_700168
Physcomitrella patens
estExt_gwp_gw1.C_700168
D
0.783
PHUM263440
Pediculus humanus
PHUM263440
I
0.874
B9HEU6_POPTR
Populus trichocarpa
POPTR_0007s12570
I
0.797
SB01G020190
Sorghum bicolor
Sb01g020190
I
0.783
SNAPOd2T00022637001
Oikopleura dioica
SNAPOd2T00022637001
I
0.874
30183.m001303
Ricinus communis
30183.m001303
I
0.811
99199
Helobdella robusta
99199
I
0.853
Aqu1.212443
Amphimedon queenslandica
Aqu1.212443
I
0.825
Aqu1.214461
Amphimedon queenslandica
Aqu1.214461
I
0.825
cassava31033.valid.m1
Manihot esculenta
cassava31033.valid.m1
I
0.797
Cucsa.251850
Cucumis sativus
Cucsa.251850
I
0.804
e_gw1.1.857.1
Daphnia pulex
e_gw1.1.857.1
I
0.895
e_gw1.3.432.1
Micromonas pusilla
e_gw1.3.432.1
I
0.720
LOC_Os10g31900
Oryza sativa
LOC_Os10g31900
I
0.783
ISCW010601
Ixodes scapularis
ISCW010601
I
0.916
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.790
ENSVPAG00000008152
Vicugna pacos
ENSVPAG00000008152
I
0.993
sf3b4
Xenopus tropicalis
ENSXETG00000011038
I
0.993
Spx
Drosophila melanogaster
FBgn0015818
I
0.860
GA17684-RA
Drosophila pseudoobscura
FBgn0077694
I
0.867
GF20385
Drosophila ananassae
FBgn0097392
I
0.867
GG19577
Drosophila erecta
FBgn0111779
I
0.867
GH17589
Drosophila grimshawi
FBgn0125059
I
0.874
GI16317
Drosophila mojavensis
FBgn0139065
I
0.874
GL21313
Drosophila persimilis
FBgn0158906
I
0.867
GM12470
Drosophila sechellia
FBgn0167407
I
0.860
GJ15655
Drosophila virilis
FBgn0202845
I
0.874
GK19717
Drosophila willistoni
FBgn0221715
I
0.867
GE16738
Drosophila yakuba
FBgn0234234
I
0.867
XM_002886132.1
Arabidopsis lyrata
fgenesh2_kg.3__3460__AT2G18510.1
I
0.762
ENSTTRG00000005217
Tursiops truncatus
ENSTTRG00000005217
I
0.993
e_gw1.6.938.1
Trichoplax adhaerens
e_gw1.6.938.1
I
0.853
Ame_R019118
Ailuropoda melanoleuca
Ame_R019118
I
0.993
estExt_Genemark1.C_60101
Coccomyxa C 169
estExt_Genemark1.C_60101
I
0.776
estExt_Genewise1.C_60440
Chlorella vulgaris
estExt_Genewise1.C_60440
I
0.776
gw1.05.00.253.1
Ostreococcus tauri
gw1.05.00.253.1
I
0.755
MDP0000131129
Malus x domestica
MDP0000131129
I
0.804
MDP0000320945
Malus x domestica
MDP0000320945
I
0.804
Minc01580
Meloidogyne incognita
Minc01580
I
0.762
Minc02568
Meloidogyne incognita
Minc02568
I
0.762
Minc12926
Meloidogyne incognita
Minc12926
I
0.762
ppa007508m
Prunus persica
ppa007508m
I
0.790
XP_001185838.1
Strongylocentrotus purpuratus
XP_001185838.1
I
0.888
XP_002157695.1
Hydra magnipapillata
XP_002157695.1
I
0.846
XP_784135.2
Strongylocentrotus purpuratus
XP_784135.2
I
0.888
Medtr3g087340
Medicago truncatula
Medtr3g087340
I
0.804
GRMZM2G170699
Zea mays
GRMZM2G170699
I
0.783
GRMZM2G102639
Zea mays
GRMZM2G102639
I
0.776
e_gwEuk.5.259.1
Ostreococcus lucimarinus
e_gwEuk.5.259.1
I
0.741
estExt_fgenesh1_pg.C_220114
Monosiga brevicollis
estExt_fgenesh1_pg.C_220114
I
0.769
estExt_fgenesh2_pm.C_9540001
Branchiostoma floridae
estExt_fgenesh2_pm.C_9540001
I
0.958
estExt_Genewise1.C_230076
Capitella teleta
estExt_Genewise1.C_230076
I
0.860
estExt_Genewise1.C_sca_2060028
Lottia gigantea
estExt_Genewise1.C_sca_2060028
I
0.902
estExt_Genewise1Plus.C_330054
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_330054
I
0.720
estExt_gwp.C_590193
Nematostella vectensis
estExt_gwp.C_590193
I
0.881
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.769
fgenesh2_pg.scaffold_36000101
Branchiostoma floridae
fgenesh2_pg.scaffold_36000101
I
0.958
Glyma09g00310.1
Glycine max
Glyma09g00310.1
I
0.804
Glyma12g36950.1
Glycine max
Glyma12g36950.1
I
0.790
gw1.3.260.1
Chlorella NC64A
gw1.3.260.1
I
0.720
gw1.5.900.1
Ostreococcus RCC809
gw1.5.900.1
I
0.741
AAH77458
Xenopus laevis
AAH77458
I
1.000
SF3B4
Tarsius syrichta
ENSTSYG00000009295
I
0.993
AMAG_03157
Allomyces macrogynus
AMAG_03157
I
0.748
emb2444
Arabidopsis thaliana
AT2G18510-TAIR-G
I
0.769
BGIOSIBCE032328
Oryza indica
BGIOSIBCE032328
I
0.783
BRADI3G27920
Brachypodium distachyon
BRADI3G27920
I
0.783
CBG13349
Caenorhabditis briggsae
CBG13349
I
0.790
CBN06124
Caenorhabditis brenneri
CBN06124
I
0.804
CJA19238
Caenorhabditis japonica
CJA19238
I
0.790
CPIJ014149
Culex quinquefasciatus
CPIJ014149
I
0.881
CRE01639
Caenorhabditis remanei
CRE01639
I
0.804
ENSACAG00000010019
Anolis carolinensis
ENSACAG00000010019
I
0.993
Q3MHE6_BOVIN
Bos taurus
ENSBTAG00000012495
I
0.993
ENSBTAG00000012793
Bos taurus
ENSBTAG00000012793
I
0.972
ENSBTAG00000026365
Bos taurus
ENSBTAG00000026365
I
0.806
ENSCAFG00000005753
Canis familiaris
ENSCAFG00000005753
I
0.916
AGAP001538
Anopheles gambiae
AGAP001538
I
0.867
AAEL013795
Aedes aegypti
AAEL013795
I
0.881
nasonia_NCBI_hmm192414
Nasonia vitripennis
nasonia_NCBI_hmm192414
I
0.888
AMAG_10429
Allomyces macrogynus
AMAG_10429
I
0.748
Bm1_43460
Brugia malayi
Bm1_43460
I
0.783
CAOG_06059
Capsaspora owczarzaki
CAOG_06059
I
0.720
CpipJ_CPIJ014149
Culex pipiens
CpipJ_CPIJ014149
I
0.881
LOAG_01189
Loa loa
LOAG_01189
I
0.790
PTSG_00878
Salpingoeca rosetta
PTSG_00878
I
0.825
RO3G_10200
Rhizopus oryzae
RO3G_10200
I
0.720
RO3G_15452
Rhizopus oryzae
RO3G_15452
I
0.706
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.790
WUBG_01785
Wuchereria bancrofti
WUBG_01785
I
0.790
PK08238.1
Cannabis sativa
PK08238.1
I
0.811
amel4_ncbi_hmm1889
Apis mellifera
amel4_ncbi_hmm1889
I
0.874
DGIL_AUG5s13542g6t1
Acyrtosiphon pisum
DGIL_AUG5s13542g6t1
I
0.867
ENSCAFG00000011617
Canis familiaris
ENSCAFG00000011617
I
0.993
A6MKC5_CALJA
Callithrix jacchus
ENSCJAG00000000793
I
0.993
ENSCPOG00000008267
Cavia porcellus
ENSCPOG00000008267
I
0.993
ENSOCUG00000004614
Oryctolagus cuniculus
ENSOCUG00000004614
I
0.993
SF3B4
Otolemur garnettii
ENSOGAG00000006265
I
0.993
ENSOPRG00000010808
Ochotona princeps
ENSOPRG00000010808
I
0.993
SF3B4
Oryzias latipes
ENSORLG00000003062
I
0.993
ENSPCAG00000000392
Procavia capensis
ENSPCAG00000000392
I
0.986
SF3B4
Pan troglodytes
ENSPTRG00000001243
I
0.993
ENSPVAG00000014171
Pteropus vampyrus
ENSPVAG00000014171
I
0.993
Sf3b4
Rattus norvegicus
ENSRNOG00000021181
I
0.993
ENSSSCG00000006665
Sus scrofa
ENSSSCG00000006665
I
0.993
ENSSTOG00000000684
Spermophilus tridecemlineatus
ENSSTOG00000000684
I
0.713
ENSSTOG00000006570
Spermophilus tridecemlineatus
ENSSTOG00000006570
I
0.959
SF3B4
Taeniopygia guttata
ENSTGUG00000004470
I
0.993
SF3B4
Tetraodon nigroviridis
ENSTNIG00000009156
I
0.993
ENSOANG00000004768
Ornithorhynchus anatinus
ENSOANG00000004768
I
0.703
Sf3b4
Mus musculus
ENSMUSG00000068856
I
0.993
ENSMODG00000018767
Monodelphis domestica
ENSMODG00000018767
I
0.993
ENSDORG00000016366
Dipodomys ordii
ENSDORG00000016366
I
0.706
LOC100054350
Equus caballus
ENSECAG00000024737
I
0.993
ENSFCAG00000010106
Felis catus
ENSFCAG00000010106
I
0.993
SF3B4
Homo sapiens
ENSG00000143368
I
0.993
SF3B4
Gasterosteus aculeatus
ENSGACG00000003819
I
0.993
SF3B4
Gallus gallus
ENSGALG00000013352
I
0.993
SF3B4
Gorilla gorilla
ENSGGOG00000004761
I
0.993
ENSLAFG00000008531
Loxodonta africana
ENSLAFG00000008531
I
0.993
ENSMEUG00000003272
Macropus eugenii
ENSMEUG00000003272
I
0.930
ENSMGAG00000000653
Meleagris gallopavo
ENSMGAG00000000653
I
0.993
SF3B4
Microcebus murinus
ENSMICG00000000296
I
0.993
ENSMLUG00000010789
Myotis lucifugus
ENSMLUG00000010789
I
0.993
SF3B4
Macaca mulatta
ENSMMUG00000007256
I
0.993
SF3B4
Takifugu rubripes
ENSTRUG00000004516
I
0.993