Smp_067420 (Schistosoma mansoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Smp_067420 T58636_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Smp_067420
M201_0.6		 Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.875
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.825
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M201_0.6 RRM 15 85
M201_0.6 RRM 102 173

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_067420 RRM 15 85
Smp_067420 RRM 102 173

Links

Other RRM family RBPs
Other Schistosoma mansoni RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.916
ISCW010601 Ixodes scapularis ISCW010601 I 0.909
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.895
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.895
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.888
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.888
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.888
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.888
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.888
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.888
SF3B4 Gallus gallus ENSGALG00000013352 I 0.888
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.888
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.888
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.888
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.888
sf3b4 Danio rerio ENSDARG00000018574 D 0.888
LOC100054350 Equus caballus ENSECAG00000024737 I 0.888
SF3B4 Homo sapiens ENSG00000143368 I 0.888
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.888
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.888
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.888
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.888
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.888
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.888
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.888
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.888
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.888
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.888
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.888
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.888
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.888
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.888
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.888
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.888
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.888
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.888
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.888
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.888
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.888
AAH45264 Xenopus laevis AAH45264 I 0.881
AAH77458 Xenopus laevis AAH77458 I 0.881
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.881
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.881
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.881
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.874
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.874
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.867
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.867
AAEL013795 Aedes aegypti AAEL013795 I 0.867
99199 Helobdella robusta 99199 I 0.867
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.867
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.867
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.867
AGAP001538 Anopheles gambiae AGAP001538 I 0.860
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.855
GH17589 Drosophila grimshawi FBgn0125059 I 0.853
GI16317 Drosophila mojavensis FBgn0139065 I 0.853
GJ15655 Drosophila virilis FBgn0202845 I 0.853
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.853
GL21313 Drosophila persimilis FBgn0158906 I 0.853
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.853
GF20385 Drosophila ananassae FBgn0097392 I 0.846
GE16738 Drosophila yakuba FBgn0234234 I 0.846
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.846
PHUM263440 Pediculus humanus PHUM263440 I 0.846
GG19577 Drosophila erecta FBgn0111779 I 0.846
GK19717 Drosophila willistoni FBgn0221715 I 0.846
GM12470 Drosophila sechellia FBgn0167407 I 0.839
Spx Drosophila melanogaster FBgn0015818 I 0.839
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.839
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.832
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.832
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.825
LOAG_01189 Loa loa LOAG_01189 I 0.825
CBN06124 Caenorhabditis brenneri CBN06124 I 0.825
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.825
sap-49 Caenorhabditis elegans C08B11.5 D 0.825
CRE01639 Caenorhabditis remanei CRE01639 I 0.818
Bm1_43460 Brugia malayi Bm1_43460 I 0.818
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.811
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.811
CBG13349 Caenorhabditis briggsae CBG13349 I 0.804
CJA19238 Caenorhabditis japonica CJA19238 I 0.804
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.797
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.790
Minc12926 Meloidogyne incognita Minc12926 I 0.783
Minc01580 Meloidogyne incognita Minc01580 I 0.783
Minc02568 Meloidogyne incognita Minc02568 I 0.783
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.769
PK08238.1 Cannabis sativa PK08238.1 I 0.769
30183.m001303 Ricinus communis 30183.m001303 I 0.769
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.769
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.769
MDP0000131129 Malus x domestica MDP0000131129 I 0.762
ppa007508m Prunus persica ppa007508m I 0.762
MDP0000320945 Malus x domestica MDP0000320945 I 0.762
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.762
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.762
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.762
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.762
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.755
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.748
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.748
SB01G020190 Sorghum bicolor Sb01g020190 I 0.748
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.748
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.748
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.748
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.741
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.741
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.741
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.741
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.741
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.734
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.734
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.734
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.720
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.720
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.720
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.715
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.713
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.706
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.706
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.706
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.706
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.706