CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TvY486_1003180
(
Trypanosoma vivax
)
CCCH ZF,CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR000571
IPR001878
IPR000504
TvY486_1003180
T00024_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TvY486_1003180
CCCH ZF
2
27
YQDRCIFFSKMGACRHGDHCTKVHVR
TvY486_1003180
RRM
72
126
KETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEESSDAARIVRELKAKKLNEI
TvY486_1003180
CCCH ZF
147
163
LEGKCERGTQCNYLHIM
TvY486_1003180
CCHC ZF
221
238
EVCHICATAGHISRDCPL
Links
Other
CCCH ZF,CCHC ZF,RRM
family RBPs
Other
Trypanosoma vivax
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29682.m000595
Ricinus communis
29682.m000595
N
0.000
30073.m002271
Ricinus communis
30073.m002271
N
0.000
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.000
AT4G17720
Arabidopsis thaliana
AT4G17720-TAIR-G
N
0.000
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.000
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.000
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.000
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.000
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.000
GSVIVG00011624001
Vitis vinifera
GSVIVG00011624001
N
0.000
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.000
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.000
MDP0000177505
Malus x domestica
MDP0000177505
N
0.000
MDP0000596287
Malus x domestica
MDP0000596287
N
0.000
Medtr5g029540
Medicago truncatula
Medtr5g029540
N
0.000
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.000
mgf007506m
Mimulus guttatus
mgf007506m
N
0.000
PK05006.1
Cannabis sativa
PK05006.1
N
0.000
ppa024222m
Prunus persica
ppa024222m
N
0.000
XM_002865109.1
Arabidopsis lyrata
Al_scaffold_0008_128
N
0.000
XM_002867996.1
Arabidopsis lyrata
fgenesh2_kg.7__2538__AT4G17720.1
N
0.000