Cucsa.322000 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.322000 T49634_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.322000.1 RRM 6 71

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.824
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.812
PK05006.1 Cannabis sativa PK05006.1 N 0.812
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.806
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.806
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.794
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.791
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.783
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.783
mgf007506m Mimulus guttatus mgf007506m N 0.779
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.776
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.776
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.768
MDP0000596287 Malus x domestica MDP0000596287 N 0.768
SB01G010170 Sorghum bicolor Sb01g010170 N 0.761
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.761
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.761
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.757
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.754
30073.m002271 Ricinus communis 30073.m002271 N 0.754
SB10G000940 Sorghum bicolor Sb10g000940 N 0.754
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.754
29682.m000595 Ricinus communis 29682.m000595 N 0.750
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.750
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.750
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.743
GRMZM2G035719 Zea mays GRMZM2G035719 N 0.742
ppa021083m Prunus persica ppa021083m N 0.742
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.739
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.739
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.739
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.739
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.739
LOC_Os04g50790 Oryza sativa LOC_Os04g50790 N 0.727
BGIOSIBCE016423 Oryza indica BGIOSIBCE016423 N 0.727
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.725
mgf014593m Mimulus guttatus mgf014593m N 0.725
MDP0000177505 Malus x domestica MDP0000177505 N 0.725
SB06G027200 Sorghum bicolor Sb06g027200 N 0.712
BRADI5G20150 Brachypodium distachyon BRADI5G20150 N 0.712
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.710
AT1G67950 Arabidopsis thaliana AT1G67950-TAIR-G N 0.701
XM_002887117.1 Arabidopsis lyrata fgenesh2_kg.2__1062__AT1G67950.2 N 0.701
MDP0000320634 Malus x domestica MDP0000320634 N 0.701
PK12998.1 Cannabis sativa PK12998.1 N 0.701