CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.322000
(
Cucumis sativus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cucsa.322000
T49634_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.322000.1
RRM
6
71
VQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLSGATIVDLSV
Links
Other
RRM
family RBPs
Other
Cucumis sativus
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.824
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.812
PK05006.1
Cannabis sativa
PK05006.1
N
0.812
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.806
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.806
Medtr5g029540
Medicago truncatula
Medtr5g029540
N
0.794
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.791
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.783
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.783
mgf007506m
Mimulus guttatus
mgf007506m
N
0.779
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.776
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.776
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.768
MDP0000596287
Malus x domestica
MDP0000596287
N
0.768
SB01G010170
Sorghum bicolor
Sb01g010170
N
0.761
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.761
GRMZM2G127559
Zea mays
GRMZM2G127559
N
0.761
XM_002867996.1
Arabidopsis lyrata
fgenesh2_kg.7__2538__AT4G17720.1
N
0.757
GRMZM2G102808
Zea mays
GRMZM2G102808
N
0.754
30073.m002271
Ricinus communis
30073.m002271
N
0.754
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.754
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.754
29682.m000595
Ricinus communis
29682.m000595
N
0.750
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.750
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.750
AT4G17720
Arabidopsis thaliana
AT4G17720-TAIR-G
N
0.743
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.742
ppa021083m
Prunus persica
ppa021083m
N
0.742
GRMZM2G051890
Zea mays
GRMZM2G051890
N
0.739
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.739
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.739
PDK_20s1346002g005
Phoenix dactylifera
PDK_20s1346002g005
N
0.739
PDK_20s1613681g001
Phoenix dactylifera
PDK_20s1613681g001
N
0.739
LOC_Os04g50790
Oryza sativa
LOC_Os04g50790
N
0.727
BGIOSIBCE016423
Oryza indica
BGIOSIBCE016423
N
0.727
AT5G46870
Arabidopsis thaliana
AT5G46870-TAIR-G
N
0.725
mgf014593m
Mimulus guttatus
mgf014593m
N
0.725
MDP0000177505
Malus x domestica
MDP0000177505
N
0.725
SB06G027200
Sorghum bicolor
Sb06g027200
N
0.712
BRADI5G20150
Brachypodium distachyon
BRADI5G20150
N
0.712
XM_002865109.1
Arabidopsis lyrata
Al_scaffold_0008_128
N
0.710
AT1G67950
Arabidopsis thaliana
AT1G67950-TAIR-G
N
0.701
XM_002887117.1
Arabidopsis lyrata
fgenesh2_kg.2__1062__AT1G67950.2
N
0.701
MDP0000320634
Malus x domestica
MDP0000320634
N
0.701
PK12998.1
Cannabis sativa
PK12998.1
N
0.701