XM_002867996.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.7__2538__AT4G17720.1 T44583_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__2538__AT4G17720.1 RRM 4 71

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.971
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.868
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.838
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.779
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.765
PK05006.1 Cannabis sativa PK05006.1 N 0.765
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.757
30073.m002271 Ricinus communis 30073.m002271 N 0.750
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.750
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.750
MDP0000177505 Malus x domestica MDP0000177505 N 0.735
MDP0000596287 Malus x domestica MDP0000596287 N 0.735
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.735
29682.m000595 Ricinus communis 29682.m000595 N 0.735
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.725
mgf007506m Mimulus guttatus mgf007506m N 0.721
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.721
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.721
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.721
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.714
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.714
ppa024222m Prunus persica ppa024222m N 0.706
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.706
mgf014593m Mimulus guttatus mgf014593m N 0.706
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.706
SB10G000940 Sorghum bicolor Sb10g000940 N 0.706
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.706
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.706
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.706
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.706
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.700
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.700
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.700