XM_002873232.1 (Arabidopsis lyrata)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		fgenesh1_pm.C_scaffold_6000515 T00166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6000515 CCCH ZF 37 61
fgenesh1_pm.C_scaffold_6000515 KH 116 178
fgenesh1_pm.C_scaffold_6000515 CCCH ZF 207 232

Links

Other CCCH ZF,KH family RBPs
Other Arabidopsis lyrata RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_031910 Aspergillus clavatus CADACLAG00001932 N 0.000
AFLA_080970 Aspergillus flavus CADAFLAG00000878 N 0.000
AFUA_1G02510 Aspergillus fumigatus CADAFUAG00009000 N 0.000
An01g05700 Aspergillus niger CADANGAG00000562 N 0.000
ANIA_10071 Aspergillus nidulans CADANIAG00002391 N 0.000
AO090005000845 Aspergillus oryzae CADAORAG00002798 N 0.000
ARB_07066 Arthroderma benhamiae ARB_07066 N 0.000
ATEG_04843 Aspergillus terreus CADATEAG00009935 N 0.000
BDBG_05830 Blastomyces dermatitidis BDBG_05830 N 0.000
CIMG_11716 Coccidioides immitis CIMG_11716 N 0.000
CPSG_00792 Coccidioides posadasii CPSG_00792 N 0.000
fgenesh1_pm.00009_#_276 Aspergillus carbonarius fgenesh1_pm.00009_#_276 N 0.000
HCAG_06968 Histoplasma capsulatum HCAG_06968 N 0.000
MCYG_06825 Microsporum canis MCYG_06825 N 0.000
MGYG_03789 Microsporum gypseum MGYG_03789 N 0.000
NFIA_022100 Neosartorya fischeri CADNFIAG00001651 N 0.000
PABG_07309 Paracoccidioides brasiliensis PABG_07309 N 0.000
PMAA_095200 Penicillium marneffei PMAA_095200 N 0.000
TEQG_02915 Trichophyton equinum TEQG_02915 N 0.000
TERG_04136 Trichophyton rubrum TERG_04136 N 0.000
TESG_00225 Trichophyton tonsurans TESG_00225 N 0.000
TRV_05699 Trichophyton verrucosum TRV_05699 N 0.000