XM_002873232.1 (Arabidopsis lyrata)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		fgenesh1_pm.C_scaffold_6000515 T00166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6000515 CCCH ZF 37 61
fgenesh1_pm.C_scaffold_6000515 KH 116 178
fgenesh1_pm.C_scaffold_6000515 CCCH ZF 207 232

Links

Other CCCH ZF,KH family RBPs
Other Arabidopsis lyrata RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G06770 Arabidopsis thaliana AT5G06770-TAIR-G N 0.991
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.904
AT3G12130 Arabidopsis thaliana AT3G12130-TAIR-G N 0.842
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.807
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.789
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.781
B9HAC6_POPTR Populus trichocarpa POPTR_0006s20620 N 0.733
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.707