AT2G05160 (Arabidopsis thaliana)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		AT2G05160-TAIR-G T00377_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G05160.1-P CCCH ZF 157 182
AT2G05160.1-P RRM 326 386

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.793
29223.m000023 Ricinus communis 29223.m000023 N 0.759
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.747
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.793
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.805
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.805
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.793
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.793
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.701
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.782
MDP0000214614 Malus x domestica MDP0000214614 N 0.759
MDP0000906147 Malus x domestica MDP0000906147 N 0.782
PK01281.1 Cannabis sativa PK01281.1 N 0.759
PK20504.1 Cannabis sativa PK20504.1 N 0.759
ppa003564m Prunus persica ppa003564m N 0.759
ppa019338m Prunus persica ppa019338m N 0.759
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.793