cassava38259.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava38259.valid.m1 T04803_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38259.valid.m1 CCCH ZF 275 297
cassava38259.valid.m1 CCCH ZF 304 320

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27810.m000633 Ricinus communis 27810.m000633 N 1.000
27810.m000634 Ricinus communis 27810.m000634 N 1.000
30169.m006450 Ricinus communis 30169.m006450 N 0.825
A9PAD3_POPTR Populus trichocarpa POPTR_0001s27370 N 0.951
B9H9X3_POPTR Populus trichocarpa POPTR_0006s05240 N 0.975
B9H9X4_POPTR Populus trichocarpa POPTR_0006s05250 N 0.975
B9HNP7_POPTR Populus trichocarpa POPTR_0009s06580 N 0.927
B9II60_POPTR Populus trichocarpa POPTR_0016s05410 N 0.975
BGIOSIBCE012624 Oryza indica BGIOSIBCE012624 N 0.950
cassava15503.m1 Manihot esculenta cassava15503.m1 N 1.000
cassava2141.valid.m1 Manihot esculenta cassava2141.valid.m1 N 0.825
cassava29664.valid.m1 Manihot esculenta cassava29664.valid.m1 N 0.975
Cucsa.195210 Cucumis sativus Cucsa.195210 N 0.975
Cucsa.336920 Cucumis sativus Cucsa.336920 N 0.950
Glyma03g29500.1 Glycine max Glyma03g29500.1 N 0.900
Glyma09g15600.1 Glycine max Glyma09g15600.1 N 0.975
Glyma10g21950.1 Glycine max Glyma10g21950.1 N 0.975
Glyma12g36600.1 Glycine max Glyma12g36600.1 N 0.975
Glyma13g27280.1 Glycine max Glyma13g27280.1 N 0.975
Glyma15g43030.1 Glycine max Glyma15g43030.1 N 0.975
Glyma19g32340.1 Glycine max Glyma19g32340.1 N 0.950
GRMZM2G001279 Zea mays GRMZM2G001279 N 0.950
GRMZM2G180979 Zea mays GRMZM2G180979 N 0.950
GSVIVG00025263001 Vitis vinifera GSVIVG00025263001 N 0.900
GSVIVG00032093001 Vitis vinifera GSVIVG00032093001 N 0.950
GSVIVG00033316001 Vitis vinifera GSVIVG00033316001 N 0.950
gw1.1.1274.1 Selaginella moellendorfii gw1.1.1274.1 N 0.950
LjSGA_020949.1 Lotus japonicus LjSGA_020949.1 N 0.950
LOC_Os03g49170 Oryza sativa LOC_Os03g49170 N 0.950
MDP0000474039 Malus x domestica MDP0000474039 N 1.000
Medtr7g110710 Medicago truncatula Medtr7g110710 N 0.950
mgf001768m Mimulus guttatus mgf001768m N 0.950
mgf002682m Mimulus guttatus mgf002682m N 0.976
ppa002189m Prunus persica ppa002189m N 1.000
SB01G011150 Sorghum bicolor Sb01g011150 N 0.950