Cucsa.018350 (Cucumis sativus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.018350 T04820_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.018350.1 CCCH ZF 548 572
Cucsa.018350.1 CCCH ZF 576 601
Cucsa.018350.1 CCCH ZF 605 627

Links

Other CCCH ZF family RBPs
Other Cucumis sativus RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29838.m001638 Ricinus communis 29838.m001638 N 0.716
B9HDY4_POPTR Populus trichocarpa POPTR_0006s15080 N 0.703
cassava30352.valid.m1 Manihot esculenta cassava30352.valid.m1 N 0.707
Glyma14g39390.1 Glycine max Glyma14g39390.1 N 0.730
GSVIVG00015184001 Vitis vinifera GSVIVG00015184001 N 0.716
PK20740.1 Cannabis sativa PK20740.1 N 0.747
ppa001043m Prunus persica ppa001043m N 0.707
XM_002866127.1 Arabidopsis lyrata scaffold_802252.1 N 0.703