CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os10g24580
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g24580
T12288_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g24580.1
CCHC ZF
339
356
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava4566.m1
Manihot esculenta
cassava4566.m1
N
0.000
MDP0000390251
Malus x domestica
MDP0000390251
N
0.000
MDP0000453200
Malus x domestica
MDP0000453200
N
0.000
MDP0000506096
Malus x domestica
MDP0000506096
N
0.000
MDP0000541906
Malus x domestica
MDP0000541906
N
0.000
MDP0000547249
Malus x domestica
MDP0000547249
N
0.000
MDP0000549016
Malus x domestica
MDP0000549016
N
0.000
MDP0000566255
Malus x domestica
MDP0000566255
N
0.000
MDP0000567895
Malus x domestica
MDP0000567895
N
0.000
MDP0000593278
Malus x domestica
MDP0000593278
N
0.000
MDP0000597218
Malus x domestica
MDP0000597218
N
0.000
MDP0000640504
Malus x domestica
MDP0000640504
N
0.000
MDP0000701448
Malus x domestica
MDP0000701448
N
0.000
MDP0000712562
Malus x domestica
MDP0000712562
N
0.000
MDP0000740123
Malus x domestica
MDP0000740123
N
0.000
MDP0000919408
Malus x domestica
MDP0000919408
N
0.000
POPTR_0001s18350
Populus trichocarpa
POPTR_0001s18350
N
0.000
POPTR_0006s13220
Populus trichocarpa
POPTR_0006s13220
N
0.000
POPTR_0011s03010
Populus trichocarpa
POPTR_0011s03010
N
0.000
POPTR_0019s05880
Populus trichocarpa
POPTR_0019s05880
N
0.000